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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03738 ATGTCCACGGAGGAGCCACCGTCCGCCGCCTCGGCCATCTCCGCGCTCGATAAACCGCTTCATCAGCTCACCGAAGACGACATTTCGCAGCTCACTCGCGAAGACTGCCGCCGGTATCTCAAGCAGAAAGGGATGAGACGGCCGTCGTGGAACAAATCACAGGCGATCCAGCAAGTGATTATGCTTAAGGCGTTGCTAGAACCATCGCCGGATTCCGATGAAGGTGGCCGGAAACGGTACATTACTTCTCGGCAACAGCAAACCCCAGCCGCTCGTGTCCAGAAAGGAACAAGTGCCGATACGGAGATCTCGCTTTCAGCGGAGGAATCAGTTCCCGGTCACCGTAATGGTAATGATACAGAGAAGTCAGATCTTTTGGGTGATAATGATTCTGCTTGCCCTGGGATTGTTGGTGGGATAGAAGAGACAAAAGGACAAATGACCATATTTTATAGTGGAAAGGTGAATGTCTATGATGATGTCCCAGCTGATAAGGCACGGGCACTATTCCAGCTTGCTGCAAGCCCGCTCCACTTTTCTCAAGAAGAGCCATTTGATGGAAACATGTTGCAACCTCCAAGCATCAATGTGGGCCGAGATTTTCCTCCTGTACTCTCGCCAGTCTTGCAAACAGTGAGAATGACAGACAACTATCGACTGCACAAAGAAGAAAGCAACATATTGCGTGAAGATAACTCTGCTGAAGGTTCAGCAAGCCGAAAAGCATCAGTTCAAAGATACCTAGAGAAACGGAAAGACAGGTTTAAGAGCAAGAGGAAAGCAGGAGCTATCTTTGATGTTTATGCTAACCATCAGATTGGGAACCATAATAACCTACATGAGCTGTTTAATAGGATCTCTCTCCCATCCTTGCTGACAAAAGGTATTGACTCATGGAAAGCCCGTCCCTTTGAAGATGATGAAGGATGCCAGAAACTCTTTAAGCATTCATCAAAGGTAAATACGCGACTTAAGATATTAGTTTCCTAG 990 47.58 MSTEEPPSAASAISALDKPLHQLTEDDISQLTREDCRRYLKQKGMRRPSWNKSQAIQQVIMLKALLEPSPDSDEGGRKRYITSRQQQTPAARVQKGTSADTEISLSAEESVPGHRNGNDTEKSDLLGDNDSACPGIVGGIEETKGQMTIFYSGKVNVYDDVPADKARALFQLAASPLHFSQEEPFDGNMLQPPSINVGRDFPPVLSPVLQTVRMTDNYRLHKEESNILREDNSAEGSASRKASVQRYLEKRKDRFKSKRKAGAIFDVYANHQIGNHNNLHELFNRISLPSLLTKGIDSWKARPFEDDEGCQKLFKHSSKVNTRLKILVS 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03738 329 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 24 263 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Smso1g03738 329 ProSiteProfiles Tify domain profile. 140 175 IPR010399 -
Smso1g03738 329 Pfam tify domain 142 174 IPR010399 -
Smso1g03738 329 MobiDBLite consensus disorder prediction 81 105 - -
Smso1g03738 329 MobiDBLite consensus disorder prediction 1 29 - -
Smso1g03738 329 MobiDBLite consensus disorder prediction 66 129 - -
Smso1g03738 329 Pfam Jas motif 240 258 IPR018467 -
Smso1g03738 329 SMART tify-2 140 175 IPR010399 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03738 K13464 jasmonate ZIM domain-containing protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
141669 Smso10g00780 Smso1g03738
149232 Smso1g03738 Smso20g01626
429110 Smso1g03738 Smso20g01626
429111 Smso1g03738 Smso29g01427
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:124160002 Smso10g00780 Smso-Chr10:8314952 wgd
Smso Smso-Chr1:124160002 Smso20g01626 Smso-Chr20:53865732 wgd
Smso Smso-Chr1:124160002 Smso29g01427 Smso-Chr29:39418836 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
SmsoJAKNSE010000034g00243 . 3 212 Tify gene family AT1G72450 32.579 1.13e-21 87.4
Smso29g01427 WGDA 7 273 Tify gene family AT4G14720 40.426 3.33e-53 174.0
Smso27g01840 SST,WGDA 27 265 Tify gene family AT4G32570 40.129 1.45e-43 152.0
Smso26g00646 WGDA 4 192 Tify gene family AT5G13220 34.921 1.26e-26 97.8
Smso26g00647 . 105 192 Tify gene family AT5G13220 42.045 8.75e-15 63.9
Smso26g00648 . 4 192 Tify gene family AT5G13220 34.737 1.92e-21 85.1
Smso26g00952 ACH,WGDA 1 252 Tify gene family AT1G19180 35.156 5.70e-33 117.0
Smso26g02807 ACH,SST,WGDA 1 332 Tify gene family AT3G17860 34.808 4.05e-33 123.0
Smso24g00449 ACH,SST,WGDA 26 228 Tify gene family AT1G19180 30.435 2.54e-23 92.0
Smso24g00450 ACH,WGDA 1 228 Tify gene family AT1G19180 30.172 1.67e-26 101.0
Smso24g00836 SST,WGDA 18 268 Tify gene family AT3G21175 56.809 6.77e-84 254.0
Smso24g02421 SST,WGDA 4 187 Tify gene family AT5G13220 35.135 3.68e-19 79.0
Smso24g02840 ACH,SST 100 330 Tify gene family AT3G17860 34.764 6.06e-23 94.0
Smso23g00827 SST,WGDA 3 128 Tify gene family AT1G30135 42.424 3.74e-21 80.5
Smso22g02619 ACH,SST 17 225 Tify gene family AT1G19180 33.645 1.69e-20 84.0
Smso21g00473 ACH,SST,WGDA 65 336 Tify gene family AT3G17860 33.455 3.16e-26 103.0
Smso21g00582 ACH,SST 17 192 Tify gene family AT5G13220 36.364 2.70e-25 94.0
Smso20g00577 ACH,SST,WGDA 3 129 Tify gene family AT1G30135 41.606 1.09e-20 79.7
Smso20g01146 ACH,SST,WGDA 22 251 Tify gene family AT1G19180 34.043 2.57e-29 105.0
Smso20g01626 ACH,WGDA 7 250 Tify gene family AT4G14720 40.541 1.15e-48 161.0
Smso19g00759 ACH,SST,WGDA 171 326 Tify gene family AT3G17860 37.349 3.07e-19 82.0
Smso17g01819 ACH,WGDA 17 227 Tify gene family AT1G19180 32.273 3.62e-22 88.2
Smso16g00054 ACH,SST,WGDA 1 216 Tify gene family AT1G72450 27.477 1.29e-15 71.6
Smso16g01389 ACH,SST,WGDA 18 268 Tify gene family AT3G21175 56.809 3.13e-85 260.0
Smso16g01919 ACH,SST,WGDA 17 244 Tify gene family AT1G19180 38.819 2.20e-30 111.0
Smso14g02988 ACH,SST 20 225 Tify gene family AT1G19180 33.333 1.29e-21 88.2
Smso12g03150 SST 111 244 Tify gene family AT1G70700 40.299 1.70e-20 83.6
Smso10g00501 ACH,SST,WGDA 1 129 Tify gene family AT1G30135 37.41 2.27e-19 76.6
Smso10g00780 ACH 10 80 Tify gene family AT4G14720 66.197 7.48e-26 97.4
Smso10g00987 ACH,SST,WGDA 1 251 Tify gene family AT1G19180 35.156 1.06e-33 117.0
Smso10g02528 ACH,SST,WGDA 3 219 Tify gene family AT1G72450 27.803 4.70e-20 84.0
Smso10g03078 ACH,SST,WGDA 17 244 Tify gene family AT1G19180 37.975 1.69e-27 103.0
Smso10g03543 ACH,SST,WGDA 18 262 Tify gene family AT3G21175 58.333 8.41e-88 263.0
Smso7g00340 ACH 40 262 Tify gene family AT3G21175 60.169 4.10e-82 247.0
Smso6g00126 ACH,SST 81 259 Tify gene family AT1G70700 34.01 1.24e-14 71.2
Smso6g00527 SST,WGDA 4 192 Tify gene family AT5G13220 37.368 1.46e-24 93.2
Smso5g00017 . 127 220 Tify gene family AT1G19180 34.043 1.18e-10 53.5
Smso5g00477 ACH,SST,WGDA 26 228 Tify gene family AT1G19180 34.3 4.61e-24 94.4
Smso5g00903 SST,WGDA 18 268 Tify gene family AT3G21175 55.642 6.54e-81 247.0
Smso5g02178 ACH,SST,WGDA 1 332 Tify gene family AT3G17860 34.513 2.26e-35 128.0
Smso4g00445 ACH,SST,WGDA 1 332 Tify gene family AT3G17860 33.721 1.78e-31 119.0
Smso4g00558 ACH,SST 17 190 Tify gene family AT5G13220 36.0 1.25e-22 87.4
Smso3g02241 SST,WGDA 27 265 Tify gene family AT4G32570 39.274 1.61e-43 152.0
Smso2g00475 WGDA 27 265 Tify gene family AT4G32570 39.667 1.48e-41 147.0
Smso2g01526 SST,WGDA 3 128 Tify gene family AT1G30135 43.511 2.19e-22 83.6
Smso1g03738 ACH,WGDA 5 273 Tify gene family AT4G14720 39.1 3.19e-49 165.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso tify 3.9e-15 No_clan TF Tify