AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso1g03742 | ATGATGTTTTCACCATCAGTTTATTCTTCTGCAAGTAATAAAACCTCAACTTCTTTGTCTGAAGAAGCTGCAACCAGCACTGTTTCCCCAGTAATTACAAGCAAGATTCATCATGAATTCACTCCATCAATGGCACTTTCTTCCATTTCAAATCATATTCAAGAACATGATCACCTCTACCCTAGTCCTCAGAAGATCAAGAAAAAGAGAAACCTCCCAGGAAACCCAGATCCAGATGCAGAAGTGATAGCATTATCACCAAAAACACTGATGGCAACAAACAGATTTGTATGTGAGATATGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAACTTCACAGAAGAGGTCATAACCTGCCATGGAAACTGAAGCAAAGGAACAACAAAGATGAAATCAAAAAAAGAGCTTATGTGTGCCCTGAACCTAGCTGTGTGCACCACCACCCCTCTAGGGCTCTTGGTGATCTCACTGGGATCAAAAAACACTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAGTGTGACAAGTGTTCTAAGATCTATGCAGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGCACTAGGGAGTATAGATGTGATTGTGGTACCCTCTTCTCCAGGAAAGATAGCTTCATTACCCACAGAGCCTTCTGCGACGCCTTGGCTGAAGAAACTGCCAGACTCTCAGCTGCAGCTGCAGCTGCAGCTGCAATTTCAATAACCAACACTCACCACCCCTCAATTATCAACAATGTTACAAATACCCCCTTCAACGTTCAACTAAGTTCACAAAACCCCCCATCATCACTTTTCCCTTTCAATCACAACCCAAACCCTACTTGGATCCCCACCCAAAACCCTAACCCGACCCGAATCAAACCCGAAACAATCCACCACCACAACCACAACCACCACCAGCAGCTGATTCCGGCGATTTCTTTGCCGTTCTACCAAGAACCGCCGCCGACATTCCACGGCCTCCAAGTTAGTACCAGCCCGCCGGCGCACCTCTCCGCCACCGCGCTGCTGCAGAAGGCGGCGACGGTGGGGGCGGTTGGGGATCACGTGGGGTCTGCAATGAGCAGTTTGGATATGGGTGAGTTGGTTCAGGTGACGACGGCCGCCGTGATCTCGCCGGGGTACCACCAGCACATGGGGCTGACGTCAGGGAATATGTCCACGTGGCAGAAGACGGACCGTTTGACCAGGGATTTTCTTGGGTTGACCGGCGAACAAGAGGATGGACACCATGGGGGTGGGGTCGAGGCTAATGTGAACGTAAGGAGTATGCTAACGTACGCGGGGGGTATAGAGATCCCAGCCGATGGATTTGGAACAAGTGCCTCGGAAGCATGGGGTAACTGTTGA | 1377 | 48.44 | MMFSPSVYSSASNKTSTSLSEEAATSTVSPVITSKIHHEFTPSMALSSISNHIQEHDHLYPSPQKIKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDEIKKRAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEETARLSAAAAAAAAISITNTHHPSIINNVTNTPFNVQLSSQNPPSSLFPFNHNPNPTWIPTQNPNPTRIKPETIHHHNHNHHQQLIPAISLPFYQEPPPTFHGLQVSTSPPAHLSATALLQKAATVGAVGDHVGSAMSSLDMGELVQVTTAAVISPGYHQHMGLTSGNMSTWQKTDRLTRDFLGLTGEQEDGHHGGGVEANVNVRSMLTYAGGIEIPADGFGTSASEAWGNC | 458 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso1g03742 | 458 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 134 | 168 | - | - | |
| Smso1g03742 | 458 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 151 | 230 | - | - | |
| Smso1g03742 | 458 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 98 | 118 | IPR013087 | - | |
| Smso1g03742 | 458 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 172 | 196 | - | - | |
| Smso1g03742 | 458 | Gene3D | Classic Zinc Finger | 75 | 144 | - | - | |
| Smso1g03742 | 458 | SMART | c2h2final6 | 173 | 193 | IPR013087 | - | |
| Smso1g03742 | 458 | SMART | c2h2final6 | 96 | 118 | IPR013087 | - | |
| Smso1g03742 | 458 | Gene3D | Classic Zinc Finger | 166 | 231 | - | - | |
| Smso1g03742 | 458 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 96 | 118 | IPR013087 | - | |
| Smso1g03742 | 458 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 199 | 236 | - | - | |
| Smso1g03742 | 458 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Smso1g03742 | 458 | FunFam | protein indeterminate-domain 12-like | 75 | 144 | - | - | |
| Smso1g03742 | 458 | SUPERFAMILY | beta-beta-alpha zinc fingers | 95 | 193 | IPR036236 | - | |
| Smso1g03742 | 458 | PANTHER | SERINE-THREONINE-PROTEIN KINASE RIO | 52 | 419 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Smso1g03742 | 458 | Pfam | Zinc finger, C2H2 type | 96 | 118 | IPR013087 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso1g03742 | K25870 | zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr12:84677378 | Smso1g03742 | Smso-Chr1:124316709 | dispersed | |
| Smso | Smso-Chr19:11903257 | Smso1g03742 | Smso-Chr1:124316709 | dispersed | |
| Smso | Smso-Chr1:124316709 | Smso22g02576 | Smso-Chr22:69727036 | dispersed | |
| Smso | Smso-Chr1:124316709 | Smso14g02947 | Smso-Chr14:89681203 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| SmsoJAKNSE010000034g00223 | . | 23 | 337 | IDZ gene family | AT1G55110 | 57.538 | 2.68e-115 | 345.0 | |
| SmsoJAKNSE010000030g00013 | . | 61 | 219 | IDZ gene family | AT2G02070 | 55.28 | 4.56e-56 | 193.0 | |
| Smso29g01496 | . | 24 | 346 | IDZ gene family | AT3G50700 | 53.614 | 8.86e-112 | 338.0 | |
| Smso29g01948 | . | 38 | 417 | IDZ gene family | AT3G45260 | 47.816 | 1.24e-116 | 348.0 | |
| Smso28g01214 | . | 38 | 416 | IDZ gene family | AT3G45260 | 49.043 | 3.92e-117 | 348.0 | |
| Smso27g01436 | . | 1 | 341 | IDZ gene family | AT1G55110 | 55.977 | 3.25e-115 | 346.0 | |
| Smso27g02283 | . | 361 | 410 | IDZ gene family | AT5G66730 | 54.717 | 1.07e-06 | 46.2 | |
| Smso27g02284 | . | 16 | 138 | IDZ gene family | AT3G50700 | 69.048 | 2.83e-60 | 192.0 | |
| Smso25g00517 | . | 17 | 339 | IDZ gene family | AT1G55110 | 56.765 | 2.33e-121 | 360.0 | |
| Smso25g01389 | . | 1 | 497 | IDZ gene family | AT5G66730 | 53.731 | 1.91e-154 | 448.0 | |
| Smso25g02177 | . | 50 | 503 | IDZ gene family | AT5G03150 | 50.813 | 2.35e-137 | 403.0 | |
| Smso25g02292 | . | 22 | 391 | IDZ gene family | AT5G66730 | 49.479 | 1.67e-109 | 329.0 | |
| Smso22g00508 | . | 198 | 242 | IDZ gene family | AT5G03150 | 54.348 | 5.31e-08 | 49.7 | |
| Smso22g00973 | . | 47 | 151 | IDZ gene family | AT3G50700 | 80.952 | 7.92e-65 | 202.0 | |
| Smso22g01983 | . | 3 | 457 | IDZ gene family | AT5G66730 | 49.301 | 5.27e-134 | 397.0 | |
| Smso22g02576 | . | 17 | 337 | IDZ gene family | AT1G55110 | 55.821 | 1.36e-116 | 348.0 | |
| Smso20g01714 | . | 28 | 346 | IDZ gene family | AT3G50700 | 53.939 | 4.05e-111 | 336.0 | |
| Smso20g02218 | . | 38 | 417 | IDZ gene family | AT3G45260 | 48.26 | 1.56e-117 | 350.0 | |
| Smso19g00571 | . | 73 | 234 | IDZ gene family | AT1G55110 | 54.878 | 6.23e-56 | 187.0 | |
| Smso18g00802 | . | 25 | 344 | IDZ gene family | AT3G50700 | 54.062 | 2.59e-107 | 324.0 | |
| Smso18g01921 | . | 17 | 339 | IDZ gene family | AT1G55110 | 56.851 | 2.29e-119 | 356.0 | |
| Smso17g01350 | . | 34 | 365 | IDZ gene family | AT3G50700 | 50.919 | 4.27e-122 | 360.0 | |
| Smso17g01799 | . | 23 | 337 | IDZ gene family | AT1G55110 | 57.231 | 9.41e-114 | 341.0 | |
| Smso16g00827 | . | 40 | 499 | IDZ gene family | AT1G03840 | 52.711 | 1.52e-139 | 406.0 | |
| Smso15g02255 | . | 23 | 337 | IDZ gene family | AT1G55110 | 57.492 | 2.75e-113 | 340.0 | |
| Smso14g02321 | . | 3 | 457 | IDZ gene family | AT5G66730 | 48.438 | 7.31e-134 | 396.0 | |
| Smso14g02947 | . | 17 | 337 | IDZ gene family | AT1G55110 | 55.06 | 6.24e-114 | 342.0 | |
| Smso12g00691 | . | 50 | 503 | IDZ gene family | AT5G03150 | 48.6 | 1.23e-133 | 397.0 | |
| Smso12g00786 | . | 49 | 260 | IDZ gene family | AT5G03150 | 75.0 | 2.74e-112 | 336.0 | |
| Smso12g01266 | . | 1 | 497 | IDZ gene family | AT5G66730 | 53.458 | 5.94e-163 | 470.0 | |
| Smso12g03309 | . | 49 | 203 | IDZ gene family | AT3G45260 | 57.325 | 5.01e-59 | 196.0 | |
| Smso11g01777 | . | 1 | 497 | IDZ gene family | AT5G66730 | 53.271 | 1.56e-162 | 469.0 | |
| Smso11g02278 | . | 49 | 246 | IDZ gene family | AT5G03150 | 79.293 | 1.61e-116 | 348.0 | |
| Smso11g02381 | . | 50 | 503 | IDZ gene family | AT5G03150 | 48.6 | 3.89e-136 | 400.0 | |
| Smso10g02010 | . | 40 | 499 | IDZ gene family | AT1G03840 | 52.814 | 4.44e-137 | 400.0 | |
| Smso8g02737 | . | 1 | 497 | IDZ gene family | AT5G66730 | 52.985 | 1.91e-158 | 458.0 | |
| Smso8g03664 | . | 50 | 503 | IDZ gene family | AT5G03150 | 49.898 | 3.50e-137 | 403.0 | |
| Smso8g03817 | . | 136 | 242 | IDZ gene family | AT5G03150 | 71.963 | 1.82e-47 | 164.0 | |
| Smso3g01789 | . | 17 | 341 | IDZ gene family | AT1G55110 | 57.798 | 2.58e-115 | 347.0 | |
| Smso3g02654 | . | 64 | 340 | IDZ gene family | AT1G55110 | 57.986 | 7.87e-113 | 336.0 | |
| Smso2g00215 | . | 49 | 242 | IDZ gene family | AT5G03150 | 79.381 | 5.38e-115 | 345.0 | |
| Smso1g00548 | . | 38 | 417 | IDZ gene family | AT3G45260 | 50.248 | 5.57e-117 | 348.0 | |
| Smso1g02502 | . | 17 | 339 | IDZ gene family | AT1G55110 | 57.267 | 2.68e-120 | 358.0 | |
| Smso1g03742 | . | 1 | 382 | IDZ gene family | AT4G02670 | 49.024 | 1.54e-134 | 392.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Smso | zf-C2H2 | 0.0045 | CL0361 | TF | C2H2 |