AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03744 ATGGGGCCTGAAAATCCTAACCGTGCAAATAATCATCAAGGGCCAACTGCTACTCCTTTTGCAGCTCCTCAAACCAACATGCCCATTTTATCATCTAATCCCATGGTTGGATCACAGCCCTCTGCTTTCAGGCCAACATCAGTTCCTGCTATGCCAAATACATCTCCATTTTCTTCTCCTGGGCCAATGCCGGGATCTGTGACTCCTGGTTTTAGACCCATGCAACCAGGTAGACCCGCTCCTTCATATGGCCCGCCAACTACAGGACCTCTCCAGCGTTTACCAGCTCCACAGTTTCCCTCAACATCTCAACCACCCCTGTCACAAACTTCCAATGTGGGCCAGCCCATATTGCCTCCGCCAATGAGACCACCTCCTCCCAGCCATGTTCCACCTGTACCAATGGGATCTCCACCTCAAAGCTTGTATAGTGTTTCTTCTAGTAATAATCCTCCAAGATCTGTTGTAGATTCACCATATTCTGCTTCCGGGCCAAACATCCAACCACCACCATCCTCAACCAGACCGCCTTACCCTGGCTATCCAGGTATACAAAGTAGCTCGGCAAGTCCACCACCACCACCATCAGTTTATCATCAAGGAGGTTATGTCCCACCTCAGCCCACCATACCTGCTCCTTTTTCTTCTCATCAAGGTGGTTATGGACAAGTTCCACCAGTTGCACCGTCATCAGGAATGTATGTAGGTGGCTCAGCACCACCTACTGGAGCTATGCCAGGTTTGGTAGAAGATTTCAGCTCACTTTCTCTAGGATCTGCTCCTGGATCATTTGATGGTGGGCTTGATGCTAAAGCATTACCAAGACCACTGGATGGTGATGTAGAACCAAGTTTTTTTGCTGGGATGTATCCCATGAATTGTGATTCTAGATATCTAAGACTTACGACTAGTGCTATACCAAATTCACAGTCTTTGGTTTCCAGGTGGCAGTTGCCTCTTGGAGCAGTTGTTTGTCCACTGGCAGTACCTCCTGAGGGGGAGGAAGTGCCAATAGTTAATTTTGCCACAATGGGTATTGTTCGTTGTAGAAGATGTCGGACGTATGTGAATCCATATGTGACGTTTACAGATGGTGGAAGAAAGTGGAGGTGCAATATATGTGCTTTACTTAATGATGTGCAAAATGATTATTTCGCTCATTTGGATGCCACTGGGAAAAGAGTCGATCTTGATCAACACCCCGAGCTTACAAAAGGTTCTGTGGAGTTTGTTGCTCCAGCTGAGTACATGGTTCGGCCTCCAATGCCACCATCATACTGTTTTATGATTGATGTATCAATATCTGCAGTTAAAAGTGGAATGCTTGAGGTGATGGCACAAACTATTAAATCTTGTTTGGATAGATTGCCGGGCAGCTCCAGAACACAAATTGGGTTCATAACTTTTGACAGCACAATTCACTTTTACAATATGAAGTCATCTTTGACACAGCCTCAAATGATGGTCGTATCAGATTTGGATGATATTTTTGTTCCATTGCCAGATGATCTCCTTGTCAACCTGTCAGATTCCAGACCTGTGGTGGAGGCATTCCTGGATAGTTTGCCGTCTATGTTTCAGGACAACGTTAATGTGGAATCTGCTTTTGGGCCCGCCCTCAAAGCAGCTTTTATGGTTATGAGCCAACTTGGAGGGAAATTATTAATTTTCCAGAGCACTCTTCCCTCACTTGGTGTTGGTCGTTTGAAGTTGCGTGGAGATGATCTTCGTGTTTATGGAACAGATAAAGAGCATGCTTTAAGAATACCAGAAGACCCATTTTATAAACAGATGGCTGCTGATTTCACCAAATTCCAAGTTGCTGTGAATATATATGCATTTAGTGACAAGTATACAGATATAGCCTCATTAGGTACTTTAGCAAAATACACTGGTGGCCAGGTATATTATTATCCAAGCTTTCATTCTGCCATTCACAAAGACAAGTTGAGACATGAGTTGGCTAGAGATCTCACTAGAGAAACTGCTTGGGAAGCTGTAATGCGTATCAGATGTGGGAAAGGAGTGTGCTTCACCTCGTATCATGGGAATTTTATGCTAAGATCCACGGATCTAATAGCACTTCCAGCCGTCGACTGTGATAAAGCTTATGCAATGCAGTTTGCTCTTGAAGAGACATTGCTTACAACTCAGATTGTGTATTTCCAAGTGGCGTTACTATACACTGCATCTTGTGGTGAAAGGCGTATTAGAGTACACACTGCTGCAGCATCAGTGGTTGCAGAGTTAGGAGAGATGTACCGCCAGGCAGATACCGGTGCTGTTGTTTCATTGCTTGGTAGATTAGCTATCGAGAAATCTTTATCATATAAATTGGAAGAGGCTCGGAACGCAGTTCAACTAAAAATCGTGAAAGCCCTCAAAGAATATCGAAAACTCTATTCAGTGCAGCATCGTGTAGGAAGCAGGATGATCTACCCAGAATCACTCAAATATTTGCCCTTATATGGATTATCACTATGTAAATCAACAGCACTTCGTGGTGGTTATGCTGATGCACAGCTTGATGAACGATGTGCAGCAGGCTTCACCATGATGGCTTTACCTGTTAAAAAAATGTTAAAGCTCTTATATCCTAGCTTGTTAAGAGTAGATGAGTATCTTGTCAAGACACCTACCGTGGATGATGATTTTGGCAGAATTTGTAAAAGGCTGCCACTTGTTGCAGAGAGCTTAGATTCTAGAGGAATATATATATTTGATGACGGTTTTCGTTTTGTTGTGTGGTTTGGCCGCATGCTTTCACCAGATTTAGCCAAGAATCTAGTTGAGGAAGATTCAGCTACAGATTTCTCAAGGAATCAGGTTTGTCTGACAGAACGTAACAATGAAATGTCAAGAAAGCTGATGGGAATACTAAAGAAACTTAGAGAGGCTGATAAATCATATTATCAATTATGTCATCTTGTGAGACAGGGTGAACAACCTCGGGAAGGTTTCTTTCTACTCTTGAATTTAGTTGAGGATCATGTTGGTGCTATGAGCGGTTATGCTGATTGGATGCTTCAGATACATCGACAAGTACAGCAATAA 3054 43.42 MGPENPNRANNHQGPTATPFAAPQTNMPILSSNPMVGSQPSAFRPTSVPAMPNTSPFSSPGPMPGSVTPGFRPMQPGRPAPSYGPPTTGPLQRLPAPQFPSTSQPPLSQTSNVGQPILPPPMRPPPPSHVPPVPMGSPPQSLYSVSSSNNPPRSVVDSPYSASGPNIQPPPSSTRPPYPGYPGIQSSSASPPPPPSVYHQGGYVPPQPTIPAPFSSHQGGYGQVPPVAPSSGMYVGGSAPPTGAMPGLVEDFSSLSLGSAPGSFDGGLDAKALPRPLDGDVEPSFFAGMYPMNCDSRYLRLTTSAIPNSQSLVSRWQLPLGAVVCPLAVPPEGEEVPIVNFATMGIVRCRRCRTYVNPYVTFTDGGRKWRCNICALLNDVQNDYFAHLDATGKRVDLDQHPELTKGSVEFVAPAEYMVRPPMPPSYCFMIDVSISAVKSGMLEVMAQTIKSCLDRLPGSSRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSDSRPVVEAFLDSLPSMFQDNVNVESAFGPALKAAFMVMSQLGGKLLIFQSTLPSLGVGRLKLRGDDLRVYGTDKEHALRIPEDPFYKQMAADFTKFQVAVNIYAFSDKYTDIASLGTLAKYTGGQVYYYPSFHSAIHKDKLRHELARDLTRETAWEAVMRIRCGKGVCFTSYHGNFMLRSTDLIALPAVDCDKAYAMQFALEETLLTTQIVYFQVALLYTASCGERRIRVHTAAASVVAELGEMYRQADTGAVVSLLGRLAIEKSLSYKLEEARNAVQLKIVKALKEYRKLYSVQHRVGSRMIYPESLKYLPLYGLSLCKSTALRGGYADAQLDERCAAGFTMMALPVKKMLKLLYPSLLRVDEYLVKTPTVDDDFGRICKRLPLVAESLDSRGIYIFDDGFRFVVWFGRMLSPDLAKNLVEEDSATDFSRNQVCLTERNNEMSRKLMGILKKLREADKSYYQLCHLVRQGEQPREGFFLLLNLVEDHVGAMSGYADWMLQIHRQVQQ 1017
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03744 1017 SUPERFAMILY beta-sandwich domain of Sec23-24 168 756 - -
Smso1g03744 1017 MobiDBLite consensus disorder prediction 1 225 - -
Smso1g03744 1017 Gene3D Severin 866 996 IPR029006 -
Smso1g03744 1017 Gene3D - 293 405 - -
Smso1g03744 1017 Pfam Sec23-Sec24 zinc finger 346 384 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Smso1g03744 1017 SUPERFAMILY Helical domain of Sec23-24 758 865 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso1g03744 1017 SUPERFAMILY vWA-like 421 660 IPR036465 -
Smso1g03744 1017 Pfam Sec23-Sec24 trunk domain 421 657 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso1g03744 1017 MobiDBLite consensus disorder prediction 1 54 - -
Smso1g03744 1017 SUPERFAMILY Zn-finger domain of Sec23-24 335 420 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Smso1g03744 1017 CDD Sec24-like 421 662 IPR041742 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso1g03744 1017 MobiDBLite consensus disorder prediction 55 93 - -
Smso1g03744 1017 MobiDBLite consensus disorder prediction 164 178 - -
Smso1g03744 1017 FunFam protein transport protein Sec24D isoform X1 423 660 - -
Smso1g03744 1017 Pfam Sec23-Sec24 beta-sandwich domain 663 746 IPR012990 -
Smso1g03744 1017 Pfam Gelsolin repeat 893 939 IPR007123 -
Smso1g03744 1017 Gene3D - 294 746 - -
Smso1g03744 1017 Gene3D Sec23-Sec24 helical domain 747 1015 - -
Smso1g03744 1017 Gene3D von Willebrand factor, type A domain 423 660 IPR036465 -
Smso1g03744 1017 MobiDBLite consensus disorder prediction 117 138 - -
Smso1g03744 1017 PANTHER SEC24-RELATED PROTEIN 34 1017 IPR050550 GO:0000149(PANTHER)|GO:0008270(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Smso1g03744 1017 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23-24 879 1017 IPR036180 -
Smso1g03744 1017 MobiDBLite consensus disorder prediction 94 116 - -
Smso1g03744 1017 MobiDBLite consensus disorder prediction 139 163 - -
Smso1g03744 1017 MobiDBLite consensus disorder prediction 186 212 - -
Smso1g03744 1017 Pfam Sec23-Sec24 helical domain 758 861 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03744 K14007 protein transport protein SEC24
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Event-related genes

Select Gene_1 Gene_2 Event_name
149235 Smso1g03744 Smso20g01634
338028 Smso28g00407 Smso1g03744
357459 Smso1g03744 Smso28g00407
429117 Smso1g03744 Smso20g01634
429118 Smso1g03744 Smso28g00407
429119 Smso1g03744 Smso29g01435
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:124427979 Smso26g00013 Smso-Chr26:122139 dispersed
Smso Smso-Chr1:124427979 Smso20g01634 Smso-Chr20:54159430 wgd
Smso Smso-Chr1:124427979 Smso28g00407 Smso-Chr28:10653304 wgd
Smso Smso-Chr1:124427979 Smso29g01435 Smso-Chr29:39573010 wgd