AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03752 ATGATGACGGGGTTAATCCAAGACCAGAGTCTCGAAAAACAGATAGAGAAACAGATTGGATGCATGTCTGGCTTCCTTCACATCTTCGATCGCCAACAGATTTTGGCCGGAAAACGTGTCTACTCCACTAAACGTCTTCCTCCATCCACAGTTGCGTCACCGGAGTCGGTCAAGTCCTTTCAGTCGACGGCGATTAGAGAAATGGAGCAGCCGAAGCCGAAGCCTGTGCCGGTGGTGGCAGAGAAGGTTGTTACAGTAGTACCTGAAAGTCCAGACCGTTTCCAGCGATCTCCGGCGGCGAACTCGAATGCCTTCACGGCGTCAACGCCGCCGAGATCGCCACTACCGCTTCCGATATTCGAGCTGAAAGACGGATCGATGAAGAGTTCATGGAAATTCTGCAAAGAAATGCCGAGACTATCGCTTGACAGCAGAGCAACGGTTGACTCGAAAGGAAGTCTTTGTCCGAAAGAGATCCGGCGAGACACCGGAACCAACTCCGTTGATGAAAGCTTCGACAAGCAACGACGGTCGCCGAGCGTCATTGCGAGACTGATGGGACTAGAGCAGCTGCCGTCTTCCGATCCGGTTTCCAGTCCGGAAACGGCGAAGAAACCTGAGCTCCGGCGATCGGCGTCGGAATCTAGGGTTTCGAGAGATTTGTTTCAGTCAAGGTTCATAGACTGCAACAATACTCACCCGAAACAACTGAATCAAACTAACAAACAACCAGCTGAAACAAATCTGATCAGCAACACTGTTCAAGGTAACAGTAACAGTAACAGGAACGCTCAGAATGGCAGAGTAAATGATTCGATGAAGTATTCATCACGAAATCAGAAGAATGAGTCTCCGAAAACACCTCAATGGAGGTCACAACAGAGGAGAAGCTTCTTCGATTCAGCAGATATTTTCCCGGAGCCAAAGCAGAAGACGGTGCCGGCGTATGGAGATTCCGATAAAAACTTAATGTTGAGAGGAATCGATGAACAGTCTAAGGATCTGGAGACGTTGAAGCACATTCTGGAAGCGTTGCAATTCAAAGGTCTGTTACATTCTAACAGACCTCTGAACAGAGACCGCCAGCGGAACTTCGTTTACGATCCGAGTTTTTTACAGGATGATTCAAACATTGTTCTCATGAAGCCATGGCGTTCTCCTGCTCCGAATCGGAGATTTGGAAACGATTTCGGAGTGAACAGATATTCCGGCGAGATTTCACCGTCGGTCAGTCCGAGAAAAGATCGTGGAGTGCTTGATCGGAGCGGCAGGAGTCCGGTGAGAGGTAGAAACTCCCCTGCTATTTCTAGAATCGGGAGTAACTCGAGAAACGGTAATACGATCGTTAAGAGAAAACCGTTAAGCATCGAAACAGAAAAGAGATTCCATGAGTCCTCTGAATCACGTAGAAACTCGCCGGTTAATTCTCCGAAGCTTACACCTAAAAGAAGCGGATCCGACCATCATTCCGTCAGTAATCGGTCACCGAGAAGCAAGAGACCGACGGAAATGGCTTATTCGAGCCAGAAGGTTACCAGAAACATCCTTGCAGAGGATGAATCATCATCCTTCTCTGAAAGCTCCGGCAGCACAGCTTCTCACTCCGATCCAGAGAGATCGAAAATGGAAGAAAACAGAGACGGAAAAAGTCTGTTAGCGAGATGTGATAAATTACTCTACAGTATAGCCGAGATGAACAGCATCACCGAGTCACACACGAGTTTCAACTCAGTCTTACCTAGTCCAGTTTCTGTTCTTGAGTCAGCGTTTGACAAGGATGAATCGTCATCTCCGTCACCTGTCATGAAACGCAGCATTGATTTCAAAGATCTTACCGTTGATCCGGAAGACGACATCTGGCGCTCAATTATTCCTCCGGAGACATCAACCAAAGACGACGAGTTCACATCTTACGATTCTGACTTCACATACATCTCGGAAATACTCCGAGTATCAAAATACCTGCCGGACGATTCCAGCGTCTTCTTTTTTCTGGAAAAACAGCAATATCTCACCGGGAACGGCTCTTCAAAAGGCTCAAAACTCCGGCGGAAGCTCGTGTTTGACGTAGTTGCTGAAATCATCGACCGGAACGGCGAACTACCGCCGTGGAATTCCATTTCGTTAACGGAATCAAGCAACTCCGTCAAGCAGATCTGTTTGGAATTTCAGAAGATTCGTGAGCCGGAAACCGCGGAAAACTTGCTGGATCTGATTTGTACGGTGCTCAAAAGAGACCTTGCCGGAAACAATGGCTGGGGAGATCAGCCGGTGGAGGTATCAGAAGCCGTACTTTACATCGAACGGCTGATATTCAAGGATTTGGTGAGCGAAACAATCCGAGATCTCGCTGAGTTTGCCGGGAAAACTACGTTCTTGGCGCCTAGAAGGAAATTGGTTTTTTAA 2406 47.96 MMTGLIQDQSLEKQIEKQIGCMSGFLHIFDRQQILAGKRVYSTKRLPPSTVASPESVKSFQSTAIREMEQPKPKPVPVVAEKVVTVVPESPDRFQRSPAANSNAFTASTPPRSPLPLPIFELKDGSMKSSWKFCKEMPRLSLDSRATVDSKGSLCPKEIRRDTGTNSVDESFDKQRRSPSVIARLMGLEQLPSSDPVSSPETAKKPELRRSASESRVSRDLFQSRFIDCNNTHPKQLNQTNKQPAETNLISNTVQGNSNSNRNAQNGRVNDSMKYSSRNQKNESPKTPQWRSQQRRSFFDSADIFPEPKQKTVPAYGDSDKNLMLRGIDEQSKDLETLKHILEALQFKGLLHSNRPLNRDRQRNFVYDPSFLQDDSNIVLMKPWRSPAPNRRFGNDFGVNRYSGEISPSVSPRKDRGVLDRSGRSPVRGRNSPAISRIGSNSRNGNTIVKRKPLSIETEKRFHESSESRRNSPVNSPKLTPKRSGSDHHSVSNRSPRSKRPTEMAYSSQKVTRNILAEDESSSFSESSGSTASHSDPERSKMEENRDGKSLLARCDKLLYSIAEMNSITESHTSFNSVLPSPVSVLESAFDKDESSSPSPVMKRSIDFKDLTVDPEDDIWRSIIPPETSTKDDEFTSYDSDFTYISEILRVSKYLPDDSSVFFFLEKQQYLTGNGSSKGSKLRRKLVFDVVAEIIDRNGELPPWNSISLTESSNSVKQICLEFQKIREPETAENLLDLICTVLKRDLAGNNGWGDQPVEVSEAVLYIERLIFKDLVSETIRDLAEFAGKTTFLAPRRKLVF 801
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03752 801 MobiDBLite consensus disorder prediction 497 535 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 482 496 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 434 451 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 251 294 - -
Smso1g03752 801 Coils Coil 328 348 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 146 217 - -
Smso1g03752 801 PANTHER LONGIFOLIA PROTEIN 13 799 IPR033334 GO:0051513(InterPro)
Smso1g03752 801 MobiDBLite consensus disorder prediction 387 548 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 299 318 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 453 468 - -
Smso1g03752 801 MobiDBLite consensus disorder prediction 202 216 - -
Smso1g03752 801 Pfam Domain of unknown function (DUF4378) 641 778 IPR025486 -
Smso1g03752 801 MobiDBLite consensus disorder prediction 154 177 - -
Smso1g03752 801 Pfam DUF761-associated sequence motif 167 195 IPR032795 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03752 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
147377 Smso17g00284 Smso1g03752
149237 Smso1g03752 Smso20g01636
149238 Smso1g03752 Smso21g02172
149239 Smso1g03752 Smso4g02509
149240 Smso1g03752 Smso8g00315
429124 Smso1g03752 Smso20g01636
429125 Smso1g03752 Smso29g01436
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr14:26034604 Smso1g03752 Smso-Chr1:124701761 dispersed
Smso Smso-Chr1:124701761 Smso21g02172 Smso-Chr21:28692603 dispersed
Smso Smso-Chr1:124701761 Smso17g00284 Smso-Chr17:3148922 wgd
Smso Smso-Chr1:124701761 Smso20g01636 Smso-Chr20:54218256 wgd
Smso Smso-Chr1:124701761 Smso29g01436 Smso-Chr29:39663908 wgd
Smso Smso-Chr1:124701761 Smso4g02509 Smso-Chr4:45807462 wgd
Smso Smso-Chr1:124701761 Smso8g00315 Smso-Chr8:4489481 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g01436 WGDA 307 540 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 46.923 1.30e-55 197.0
Smso29g02210 . 258 512 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 36.015 2.10e-26 107.0
Smso28g01485 ACH,SST 706 919 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 22.172 6.50e-07 50.8
Smso28g01584 SST 7 512 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 35.37 4.49e-58 197.0
Smso27g00642 SST 1 40 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 77.5 8.13e-18 77.8
Smso27g00774 SST 634 807 TRM (TON1 Recruiting Motif) Superfamily AT5G42710 43.503 3.68e-42 164.0
Smso27g01598 ACH,SST 9 425 TRM (TON1 Recruiting Motif) Superfamily AT4G23020 25.314 5.95e-27 110.0
Smso27g01645 SST,WGDA 321 703 TRM (TON1 Recruiting Motif) Superfamily AT2G45900 24.485 8.30e-20 91.3
Smso27g01759 ACH,SST,WGDA 180 791 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 29.012 2.47e-35 140.0
Smso26g00104 ACH,WGDA 10 423 TRM (TON1 Recruiting Motif) Superfamily AT4G23020 26.042 4.11e-19 89.0
Smso26g00412 . 35 414 TRM (TON1 Recruiting Motif) Superfamily AT4G00770 27.628 4.37e-18 83.2
Smso26g00465 ACH,WGDA 27 784 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 25.063 3.52e-31 128.0
Smso26g00878 ACH,WGDA 8 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 42.263 0.0 563.0
Smso25g01552 ACH,SST 203 383 TRM (TON1 Recruiting Motif) Superfamily AT3G02170 36.683 6.29e-21 92.0
Smso25g02658 . 39 657 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 32.282 3.11e-54 195.0
Smso24g00123 SST,WGDA 1 196 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 39.216 1.19e-27 117.0
Smso24g01280 SST 1 775 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 39.156 8.30e-167 500.0
Smso24g01442 SST 8 824 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 29.379 3.95e-70 245.0
Smso24g01629 ACH,SST,WGDA 742 961 TRM (TON1 Recruiting Motif) Superfamily AT1G18620 40.0 2.14e-37 146.0
Smso24g01881 ACH,SST,WGDA 203 425 TRM (TON1 Recruiting Motif) Superfamily AT4G23020 29.032 6.28e-10 58.5
Smso23g00318 SST,WGDA 11 826 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 30.924 1.53e-72 251.0
Smso22g01415 ACH,SST,WGDA 782 1023 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 38.683 6.43e-34 134.0
Smso21g00858 ACH,SST 203 460 TRM (TON1 Recruiting Motif) Superfamily AT2G39435 31.783 8.64e-26 107.0
Smso21g02172 ACH,SST,WGDA 245 540 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 36.923 6.03e-39 149.0
Smso21g02525 ACH,WGDA 1 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 40.952 3.20e-180 543.0
Smso21g02583 . 473 824 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 32.778 6.82e-37 144.0
Smso21g03000 ACH,SST,WGDA 776 1004 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 50.649 6.02e-54 191.0
Smso20g00311 ACH,SST,WGDA 27 785 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 29.426 1.08e-59 214.0
Smso20g01013 ACH,SST,WGDA 12 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 45.659 0.0 601.0
Smso20g01636 ACH,WGDA 308 540 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 46.718 1.91e-57 202.0
Smso20g02517 WGDA 8 435 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 33.333 3.15e-44 157.0
Smso19g00248 ACH,SST 225 703 TRM (TON1 Recruiting Motif) Superfamily AT2G45900 28.745 1.54e-42 161.0
Smso18g00905 . 4 809 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 32.874 2.34e-99 327.0
Smso17g00284 ACH,SST,WGDA 307 526 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 41.176 1.29e-39 152.0
Smso17g00380 ACH,SST,WGDA 23 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 42.291 0.0 542.0
Smso17g00554 SST 17 157 TRM (TON1 Recruiting Motif) Superfamily AT5G58630 30.07 1.41e-06 45.4
Smso17g00641 SST,WGDA 665 824 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 48.447 5.69e-37 145.0
Smso17g02159 . 633 925 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 38.127 1.31e-38 150.0
Smso17g02598 . 28 256 TRM (TON1 Recruiting Motif) Superfamily AT5G51850 32.661 9.11e-18 84.0
Smso17g02846 ACH,SST,WGDA 777 1005 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 46.288 1.14e-49 178.0
Smso16g02282 SST,WGDA 1 196 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 38.119 1.58e-25 110.0
Smso15g01368 ACH,WGDA 634 925 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 38.796 5.47e-41 157.0
Smso14g00677 . 39 657 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 31.908 3.23e-58 205.0
Smso14g00815 . 182 223 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 42.857 1.30e-06 42.0
Smso14g01689 ACH,SST,WGDA 730 971 TRM (TON1 Recruiting Motif) Superfamily AT1G18620 38.71 6.30e-35 137.0
Smso12g00110 SST 25 650 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 34.429 2.76e-66 228.0
Smso12g00426 ACH,SST 693 919 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 35.968 2.63e-21 95.5
Smso12g00723 ACH,SST 61 737 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 30.269 2.00e-42 163.0
Smso12g01054 ACH,SST 719 1012 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 34.343 9.47e-41 157.0
Smso12g03601 ACH,SST 233 703 TRM (TON1 Recruiting Motif) Superfamily AT2G45900 29.019 4.08e-39 151.0
Smso11g02016 ACH,SST 824 1012 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 38.095 4.04e-28 117.0
Smso11g02355 ACH,SST 61 921 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 29.727 2.28e-68 242.0
Smso11g02677 ACH,SST 608 919 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 32.759 2.28e-22 99.8
Smso11g03017 SST 32 650 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 34.153 5.43e-72 244.0
Smso10g00283 ACH,SST,WGDA 27 785 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 29.125 4.32e-56 204.0
Smso10g00867 ACH,SST,WGDA 23 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 43.987 0.0 568.0
Smso10g01292 SST 23 146 TRM (TON1 Recruiting Motif) Superfamily AT5G58630 35.878 6.25e-13 66.6
Smso10g02676 SST,WGDA 1 280 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 33.333 1.43e-27 116.0
Smso8g00315 ACH,SST,WGDA 307 517 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 43.231 1.07e-38 149.0
Smso8g00405 ACH,SST,WGDA 23 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 43.087 0.0 548.0
Smso8g00581 SST 57 160 TRM (TON1 Recruiting Motif) Superfamily AT5G58630 32.381 3.13e-06 43.1
Smso8g00689 SST,WGDA 403 549 TRM (TON1 Recruiting Motif) Superfamily AT1G07620 37.349 2.24e-21 95.9
Smso8g01696 ACH,SST,WGDA 777 1005 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 46.725 1.74e-50 181.0
Smso8g02477 . 108 239 TRM (TON1 Recruiting Motif) Superfamily AT5G51850 42.222 3.49e-15 74.7
Smso8g02920 ACH,SST 634 909 TRM (TON1 Recruiting Motif) Superfamily AT5G15580 36.972 5.14e-39 150.0
Smso7g01951 SST 23 146 TRM (TON1 Recruiting Motif) Superfamily AT5G58630 35.156 3.21e-13 67.4
Smso6g01106 ACH,SST,WGDA 244 473 TRM (TON1 Recruiting Motif) Superfamily AT4G11780 27.799 8.65e-10 58.2
Smso6g01399 ACH,SST,WGDA 6 903 TRM (TON1 Recruiting Motif) Superfamily AT3G02170 29.61 9.06e-74 256.0
Smso6g01616 SST 8 824 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 29.811 2.87e-74 256.0
Smso6g01810 SST 1 775 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 39.298 1.13e-166 500.0
Smso5g00134 SST,WGDA 612 723 TRM (TON1 Recruiting Motif) Superfamily AT3G24630 30.088 7.58e-07 50.8
Smso4g00867 ACH,SST 203 460 TRM (TON1 Recruiting Motif) Superfamily AT2G39435 33.333 1.35e-30 121.0
Smso4g02509 ACH,SST,WGDA 256 540 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 36.57 2.47e-38 147.0
Smso4g02790 . 1 923 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 40.569 1.10e-177 535.0
Smso4g02813 WGDA 439 824 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 30.576 2.24e-35 140.0
Smso4g03296 ACH,SST,WGDA 599 1004 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 39.709 7.33e-60 214.0
Smso3g00686 ACH,SST 1 1023 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 42.208 0.0 575.0
Smso3g00852 SST 633 807 TRM (TON1 Recruiting Motif) Superfamily AT5G42710 42.697 1.38e-41 162.0
Smso3g00854 . 90 303 TRM (TON1 Recruiting Motif) Superfamily AT5G42710 36.866 4.81e-27 110.0
Smso3g00856 . 646 805 TRM (TON1 Recruiting Motif) Superfamily AT5G42710 41.104 9.47e-36 129.0
Smso3g01979 ACH,SST 3 425 TRM (TON1 Recruiting Motif) Superfamily AT4G23020 25.702 7.87e-24 101.0
Smso3g02023 SST,WGDA 497 703 TRM (TON1 Recruiting Motif) Superfamily AT2G45900 31.579 8.98e-23 100.0
Smso3g02160 ACH,SST,WGDA 11 810 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 31.198 1.12e-77 265.0
Smso3g02688 . 183 243 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 43.038 7.41e-09 53.5
Smso2g00521 ACH,SST,WGDA 11 810 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 29.564 1.33e-69 242.0
Smso2g00592 WGDA 497 703 TRM (TON1 Recruiting Motif) Superfamily AT2G45900 29.187 1.72e-18 87.0
Smso2g00796 . 546 824 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 34.437 4.30e-39 154.0
Smso2g01063 ACH,WGDA 780 959 TRM (TON1 Recruiting Motif) Superfamily AT1G18620 37.778 3.18e-27 115.0
Smso2g01170 . 784 827 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 43.182 2.70e-06 43.5
Smso1g00077 ACH 95 800 TRM (TON1 Recruiting Motif) Superfamily AT3G05750 26.471 2.97e-32 131.0
Smso1g00158 SST,WGDA 7 512 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 35.581 8.73e-63 210.0
Smso1g00257 ACH,SST 680 919 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 22.892 1.63e-07 52.4
Smso1g03276 ACH 1 793 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 29.577 2.15e-69 243.0
Smso1g03752 ACH,WGDA 306 540 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 46.538 5.39e-57 202.0