AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso1g03760 | ATGGACCAAAAGAGAAGCACTCTGGATCTTTTTAAAACCAGTGATCTCGCAACCGAGCTCAGATTAGGGTTGCCGGGAACCGATGACCAGCCGGAGATCAAGACCAGTCTTTCCGGCAACAAAAGAAGTTCATCGGAGATGGGATCAAGCACTTGCACAGATGAAAATGAATCAAGATATTCACCACCCACCAATGACCAAGTTGTGGGGTGGCCGCCGGTGAGATCTTACCGGAAAAGCATACTTCAGGTGAAGAAAACGGAGTCGGAGATGGGTTCAGGGATGTATGTGAAAGTGAGCATGGATGGAGCTCCATATTTGAGGAAACTAGACCTTACAATGTACAAATGCTATGAAGAACTCATGAAGGGTTTACAAGAGATGTTTAAGTGCATCATTGGGTTGTACTCTGAGAGAGAAGGGTACAATGGATCACAACATGTTCCAACTTATGAGGATAAAGATGGAGATTGGATGCTTGTTGGAGATGTGCCATGGGAGATGTTCATAAGTTCTTGCAAAAGACTTAGAATTATGAAGAGTTGTGAAGCTAGAGGGTTGGGTGATTTTGTATAA | 576 | 43.92 | MDQKRSTLDLFKTSDLATELRLGLPGTDDQPEIKTSLSGNKRSSSEMGSSTCTDENESRYSPPTNDQVVGWPPVRSYRKSILQVKKTESEMGSGMYVKVSMDGAPYLRKLDLTMYKCYEELMKGLQEMFKCIIGLYSEREGYNGSQHVPTYEDKDGDWMLVGDVPWEMFISSCKRLRIMKSCEARGLGDFV | 191 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso1g03760 | 191 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 17 | 185 | IPR003311 | GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Smso1g03760 | 191 | Pfam | AUX-IAA family | 17 | 188 | IPR033389 | - | |
| Smso1g03760 | 191 | Gene3D | - | 89 | 190 | - | - | |
| Smso1g03760 | 191 | FunFam | Auxin-responsive protein | 89 | 191 | - | - | |
| Smso1g03760 | 191 | SUPERFAMILY | CAD & PB1 domains | 88 | 180 | - | - | |
| Smso1g03760 | 191 | MobiDBLite | consensus disorder prediction | 22 | 69 | - | - | |
| Smso1g03760 | 191 | MobiDBLite | consensus disorder prediction | 31 | 65 | - | - | |
| Smso1g03760 | 191 | ProSiteProfiles | PB1 domain profile. | 94 | 181 | IPR053793 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso1g03760 | K14484 | auxin-responsive protein IAA |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr1:124852767 | Smso21g02407 | Smso-Chr21:36494981 | dispersed | |
| Smso | Smso-Chr1:111509421 | Smso1g03760 | Smso-Chr1:124852767 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso10g00791 | Smso-Chr10:8402748 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso17g00291 | Smso-Chr17:3230967 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso20g00918 | Smso-Chr20:15705919 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso20g01638 | Smso-Chr20:54493074 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso29g01441 | Smso-Chr29:39765050 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso4g02520 | Smso-Chr4:47098012 | wgd | |
| Smso | Smso-Chr1:124852767 | Smso8g00320 | Smso-Chr8:4624595 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| SmsoJAKNSE010000037g00199 | . | 1 | 226 | IAA gene family | AT4G14550 | 53.942 | 3.25e-74 | 223.0 | |
| SmsoJAKNSE010000034g00134 | . | 2 | 219 | IAA gene family | AT3G04730 | 44.954 | 4.50e-52 | 165.0 | |
| SmsoJAKNSE010000034g00135 | . | 10 | 142 | IAA gene family | AT3G23030 | 38.971 | 1.38e-19 | 79.0 | |
| SmsoJAKNSE010000034g00161 | . | 1 | 236 | IAA gene family | AT3G04730 | 47.842 | 9.02e-72 | 219.0 | |
| SmsoJAKNSE010000034g00182 | . | 3 | 266 | IAA gene family | AT1G51950 | 49.291 | 6.37e-74 | 224.0 | |
| Smso29g01441 | . | 4 | 174 | IAA gene family | AT3G23030 | 56.477 | 4.87e-62 | 188.0 | |
| Smso29g01860 | . | 54 | 244 | IAA gene family | AT2G33310 | 53.769 | 1.01e-62 | 196.0 | |
| Smso29g01861 | . | 183 | 210 | IAA gene family | AT2G33310 | 100.0 | 7.18e-14 | 67.0 | |
| Smso28g01077 | . | 54 | 246 | IAA gene family | AT2G33310 | 54.187 | 1.59e-65 | 203.0 | |
| Smso27g01201 | SST | 76 | 224 | IAA gene family | AT2G33310 | 32.68 | 6.54e-22 | 87.8 | |
| Smso27g01366 | . | 120 | 198 | IAA gene family | AT3G04730 | 59.494 | 3.11e-26 | 94.7 | |
| Smso27g01474 | . | 1 | 252 | IAA gene family | AT1G51950 | 44.706 | 1.78e-57 | 181.0 | |
| Smso26g01294 | . | 2 | 236 | IAA gene family | AT3G04730 | 47.761 | 1.02e-71 | 218.0 | |
| Smso25g02778 | . | 125 | 224 | IAA gene family | AT3G04730 | 39.806 | 2.23e-16 | 69.3 | |
| Smso25g02779 | . | 135 | 228 | IAA gene family | AT2G33310 | 37.234 | 6.00e-17 | 70.9 | |
| Smso24g00513 | . | 2 | 235 | IAA gene family | AT3G04730 | 49.042 | 8.28e-69 | 211.0 | |
| Smso24g00534 | SST | 1 | 197 | IAA gene family | AT4G14550 | 38.889 | 1.86e-31 | 117.0 | |
| Smso24g00535 | . | 9 | 163 | IAA gene family | AT3G23030 | 44.025 | 3.66e-38 | 127.0 | |
| Smso24g01476 | . | 65 | 233 | IAA gene family | AT3G04730 | 60.234 | 6.01e-65 | 203.0 | |
| Smso22g00100 | . | 1 | 226 | IAA gene family | AT4G14550 | 53.942 | 5.28e-73 | 223.0 | |
| Smso22g01648 | . | 1 | 228 | IAA gene family | AT4G14550 | 46.78 | 1.30e-73 | 226.0 | |
| Smso22g02462 | . | 2 | 232 | IAA gene family | AT3G04730 | 45.726 | 7.55e-57 | 177.0 | |
| Smso22g02463 | . | 1 | 215 | IAA gene family | AT4G14550 | 39.535 | 1.67e-35 | 121.0 | |
| Smso22g02489 | . | 1 | 235 | IAA gene family | AT3G04730 | 48.872 | 3.58e-73 | 223.0 | |
| Smso21g02407 | . | 9 | 163 | IAA gene family | AT3G23030 | 58.14 | 4.24e-61 | 186.0 | |
| Smso21g02411 | . | 1 | 236 | IAA gene family | AT3G04730 | 63.968 | 2.14e-102 | 295.0 | |
| Smso20g00918 | . | 6 | 171 | IAA gene family | AT3G23030 | 55.495 | 3.59e-61 | 188.0 | |
| Smso20g01002 | ACH,SST,WGDA | 44 | 223 | IAA gene family | AT2G33310 | 46.875 | 1.75e-45 | 151.0 | |
| Smso20g01638 | . | 14 | 174 | IAA gene family | AT3G23030 | 57.542 | 1.43e-60 | 184.0 | |
| Smso20g02102 | . | 62 | 244 | IAA gene family | AT2G33310 | 54.974 | 7.48e-64 | 197.0 | |
| Smso18g00118 | . | 1 | 217 | IAA gene family | AT4G14550 | 52.361 | 2.13e-67 | 206.0 | |
| Smso18g00239 | . | 82 | 210 | IAA gene family | AT1G04250 | 34.884 | 1.22e-18 | 79.3 | |
| Smso18g02649 | . | 1 | 227 | IAA gene family | AT4G14550 | 71.674 | 1.11e-113 | 323.0 | |
| Smso17g00028 | . | 90 | 167 | IAA gene family | AT3G23030 | 39.744 | 2.07e-07 | 44.3 | |
| Smso17g00291 | . | 9 | 167 | IAA gene family | AT3G23030 | 58.58 | 6.56e-59 | 182.0 | |
| Smso17g00369 | ACH,SST,WGDA | 44 | 241 | IAA gene family | AT2G33310 | 50.679 | 8.25e-59 | 187.0 | |
| Smso17g01151 | . | 1 | 228 | IAA gene family | AT4G14550 | 47.735 | 7.92e-73 | 224.0 | |
| Smso17g01700 | . | 2 | 222 | IAA gene family | AT3G04730 | 46.154 | 1.63e-54 | 172.0 | |
| Smso17g01701 | . | 10 | 165 | IAA gene family | AT3G23030 | 43.902 | 2.48e-33 | 115.0 | |
| Smso17g01726 | . | 1 | 236 | IAA gene family | AT3G04730 | 47.122 | 2.10e-71 | 218.0 | |
| Smso17g01749 | . | 3 | 266 | IAA gene family | AT1G51950 | 50.0 | 6.51e-76 | 229.0 | |
| Smso16g00149 | . | 1 | 195 | IAA gene family | AT4G14550 | 45.128 | 1.82e-46 | 150.0 | |
| Smso16g01824 | SST | 7 | 161 | IAA gene family | AT3G23030 | 40.361 | 1.13e-31 | 110.0 | |
| Smso16g02088 | SST | 131 | 222 | IAA gene family | AT2G33310 | 29.348 | 3.73e-08 | 49.3 | |
| Smso15g00984 | . | 125 | 225 | IAA gene family | AT3G04730 | 66.337 | 5.48e-47 | 150.0 | |
| Smso15g01577 | . | 1 | 227 | IAA gene family | AT4G14550 | 48.601 | 3.02e-73 | 224.0 | |
| Smso15g02152 | . | 7 | 210 | IAA gene family | AT1G04250 | 47.059 | 1.25e-53 | 169.0 | |
| Smso15g02153 | . | 10 | 170 | IAA gene family | AT3G23030 | 45.029 | 1.52e-36 | 123.0 | |
| Smso15g02184 | . | 1 | 236 | IAA gene family | AT3G04730 | 46.763 | 4.70e-71 | 218.0 | |
| Smso15g02223 | . | 3 | 266 | IAA gene family | AT1G51950 | 52.03 | 6.55e-79 | 236.0 | |
| Smso14g00564 | . | 121 | 227 | IAA gene family | AT3G04730 | 39.252 | 8.97e-21 | 80.9 | |
| Smso14g01958 | . | 1 | 227 | IAA gene family | AT4G14550 | 47.945 | 1.00e-73 | 226.0 | |
| Smso14g02849 | . | 1 | 235 | IAA gene family | AT3G04730 | 49.43 | 5.54e-72 | 219.0 | |
| Smso14g02892 | . | 3 | 266 | IAA gene family | AT1G51950 | 54.448 | 9.07e-81 | 242.0 | |
| Smso10g00419 | . | 73 | 167 | IAA gene family | AT3G23030 | 37.895 | 2.67e-07 | 47.4 | |
| Smso10g00791 | . | 8 | 171 | IAA gene family | AT3G23030 | 53.073 | 3.77e-59 | 181.0 | |
| Smso10g00858 | ACH,SST,WGDA | 44 | 223 | IAA gene family | AT2G33310 | 48.469 | 2.15e-46 | 154.0 | |
| Smso10g01576 | SST | 76 | 223 | IAA gene family | AT2G33310 | 32.432 | 6.40e-23 | 90.9 | |
| Smso10g01688 | . | 1 | 228 | IAA gene family | AT4G14550 | 53.814 | 8.18e-78 | 232.0 | |
| Smso10g02439 | . | 1 | 214 | IAA gene family | AT4G14550 | 47.664 | 2.44e-58 | 181.0 | |
| Smso10g02888 | SST | 131 | 222 | IAA gene family | AT2G33310 | 28.261 | 2.50e-07 | 47.0 | |
| Smso10g03173 | SST | 7 | 161 | IAA gene family | AT3G23030 | 42.262 | 2.22e-34 | 117.0 | |
| Smso8g00320 | . | 9 | 167 | IAA gene family | AT3G23030 | 56.395 | 1.05e-56 | 177.0 | |
| Smso8g00390 | ACH,SST,WGDA | 44 | 246 | IAA gene family | AT2G33310 | 48.276 | 2.44e-55 | 178.0 | |
| Smso7g01208 | . | 1 | 228 | IAA gene family | AT4G14550 | 54.393 | 1.38e-77 | 236.0 | |
| Smso7g01616 | SST | 76 | 223 | IAA gene family | AT2G33310 | 31.757 | 6.80e-22 | 88.2 | |
| Smso6g01576 | . | 65 | 234 | IAA gene family | AT3G04730 | 61.047 | 4.50e-67 | 208.0 | |
| Smso6g02447 | . | 9 | 150 | IAA gene family | AT3G23030 | 51.351 | 1.36e-40 | 131.0 | |
| Smso5g00526 | . | 1 | 227 | IAA gene family | AT3G04730 | 50.607 | 6.37e-70 | 214.0 | |
| Smso5g00548 | . | 62 | 216 | IAA gene family | AT1G04250 | 46.795 | 1.05e-41 | 137.0 | |
| Smso5g00549 | . | 9 | 163 | IAA gene family | AT3G23030 | 44.099 | 1.46e-38 | 127.0 | |
| Smso4g02520 | . | 9 | 163 | IAA gene family | AT3G23030 | 57.558 | 8.81e-61 | 185.0 | |
| Smso4g02525 | . | 1 | 236 | IAA gene family | AT3G04730 | 62.151 | 1.52e-100 | 290.0 | |
| Smso4g02687 | WGDA | 44 | 246 | IAA gene family | AT2G33310 | 50.917 | 4.76e-60 | 191.0 | |
| Smso3g01491 | SST | 76 | 224 | IAA gene family | AT2G33310 | 33.557 | 8.25e-22 | 88.6 | |
| Smso3g01832 | . | 1 | 251 | IAA gene family | AT1G51950 | 45.669 | 2.08e-59 | 186.0 | |
| Smso2g02024 | . | 129 | 227 | IAA gene family | AT2G33310 | 48.485 | 4.62e-24 | 94.0 | |
| Smso1g00702 | . | 62 | 246 | IAA gene family | AT2G33310 | 55.897 | 3.86e-67 | 205.0 | |
| Smso1g01262 | . | 1 | 226 | IAA gene family | AT4G14550 | 54.167 | 1.29e-73 | 221.0 | |
| Smso1g03147 | . | 1 | 227 | IAA gene family | AT4G14550 | 73.391 | 2.48e-117 | 332.0 | |
| Smso1g03760 | . | 14 | 170 | IAA gene family | AT3G23030 | 58.621 | 1.05e-59 | 182.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Smso | AUX_IAA | 3.1e-54 | CL0072 | TR | AUX/IAA |