Gene detail

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso1g03762	ATGGCATCCATCTCAGCTTCCATCTCTACCTCCTCACCATCCTTCTCTCTGCTCCAAAAGCCCACGATCACCACCCATGCTTCTCCGGTCATCGGGTTGCCATCAATGAGCAAGATGGGGAGAGTGAGATGTTCCATGGAAGGTAAGCCCGTTGTCACATCCGACGACGGTGCATCGAAGTTAAGGATGGGTTCACCATCGTTGATGGGTGCCGCAGTGGCTGCAGCCATGTCGAGCCCAGCAGCCATGGCTCTAGTGGACGAGAGACTGAGCACCGAAGGGACCGGGCTGCCCTTTGGTCTAAGCAACAACCTTCTCGGGTGGATCCTTTTTGGTGTCTTTGGTTTGATTTGGGCACTTTACTTTGTGTACACCGGTAGCCTTGATGAGGATGAGGAGTCAGTTTCTCCGGTCTTTTGCTACTCGGAGCTAAAAATCCTGAAATGGCCCGAAGGTGAACAAGAAGGATCAACATGGTTGGACCCGTTGCGTAAGACCGCGTTTAAGGTTCAAATTAAAGGGGTGAAGGTTTTGCTGAACCACGGTGGTTTGGTTGATACGGTGGATGGTAATGGCTACACAACTCTTCATTGGGCGGTAGAAGCCGGTCATGCTCAGGTTGCAATGACGTTAATCGCGCATGGAGCAAAGGCTAACATGAAATCTCTTGAGGTTAATTTTGATTTTGATTCTTTTAGGAATCATAACTCTCTTCGCGGTAAGATAGAAAGAGCTTAA	738	49.59	MASISASISTSSPSFSLLQKPTITTHASPVIGLPSMSKMGRVRCSMEGKPVVTSDDGASKLRMGSPSLMGAAVAAAMSSPAAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYTGSLDEDEESVSPVFCYSELKILKWPEGEQEGSTWLDPLRKTAFKVQIKGVKVLLNHGGLVDTVDGNGYTTLHWAVEAGHAQVAMTLIAHGAKANMKSLEVNFDFDSFRNHNSLRGKIERA	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso1g03762	245	Gene3D	-	142	228	IPR036770	-
	Smso1g03762	245	Pfam	Photosystem II reaction centre W protein (PsbW)	1	134	IPR009806	GO:0009507(InterPro)\|GO:0009523(InterPro)\|GO:0015979(InterPro)
	Smso1g03762	245	ProSiteProfiles	Ankyrin repeat profile.	191	223	IPR002110	GO:0005515(InterPro)
	Smso1g03762	245	SUPERFAMILY	Ankyrin repeat	160	222	IPR036770	-
	Smso1g03762	245	Pfam	Ankyrin repeats (3 copies)	173	221	IPR002110	GO:0005515(InterPro)
	Smso1g03762	245	SMART	ANK-2a	191	220	IPR002110	GO:0005515(InterPro)
	Smso1g03762	245	SMART	ANK-2a	158	187	IPR002110	GO:0005515(InterPro)
	Smso1g03762	245	PANTHER	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	1	134	IPR009806	GO:0009507(InterPro)\|GO:0009523(InterPro)\|GO:0009535(PANTHER)\|GO:0015979(InterPro)\|GO:0042549(PANTHER)
	Smso1g03762	245	ProSiteProfiles	Ankyrin repeat region circular profile.	191	222	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso1g03762	K02721	photosystem II PsbW protein

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr1:124887566	Smso28g00457	Smso-Chr28:12166527	dispersed
	Smso	Smso-Chr1:124887566	Smso1g03764	Smso-Chr1:124929682	proximal
	Smso	Smso-Chr1:124887566	Smso8g00325	Smso-Chr8:4688466	wgd