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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03765 ATGGCGAATCACGCCGCCGTACTGGCCCTCTTCTGCACCATCTCCTCAATCCTCGGCCCCGTCACTTGCCGCGCCACCACCGCCACCTCCACCGACACCTCCGCCCCCTCCCCAGCCCCGTCCTCACCATCCTCCGACGGCGAATCATTCGTTGTGCAAGGCAAAGTTTACTGCGATCCGTGCCGGATCCAATTCCCCACCAAACTCAGCTATCCCGTCCCCAACACGAAAGTTGTTCTCCGGTGCCGTGAACGCGAATCCGGCACCGAAACGTCGAAGATCGAGGGGAAGAGTGACACGAACGGCATGTACAGCATCACGGCGACCGGGGACCATGAGGAGGAGATCTGTGATGTGCGGATCACGGAGAGCCCTGATAGCAAGTGCCCGGAGGTGATGGATGATGAGAGCAGTGCTAGGGTTTCGTTGACTGATAAGAATGGAGTTCGAGGGAAGATTCGTATGGCGAATCCGATTGGGTTCATGGTGAAGGAAATTGATCCTCGCTGCAAGGAGATTCTCGCTGAGATTGGTATTACTGGGATCTAA 549 57.01 MANHAAVLALFCTISSILGPVTCRATTATSTDTSAPSPAPSSPSSDGESFVVQGKVYCDPCRIQFPTKLSYPVPNTKVVLRCRERESGTETSKIEGKSDTNGMYSITATGDHEEEICDVRITESPDSKCPEVMDDESSARVSLTDKNGVRGKIRMANPIGFMVKEIDPRCKEILAEIGITGI 182
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03765 182 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 10 180 IPR006041 -
Smso1g03765 182 Pfam Pollen protein Ole e 1 like 52 136 - -
Smso1g03765 182 ProSitePatterns Pollen proteins Ole e I family signature. 53 62 IPR006040 GO:0005615(InterPro)
Smso1g03765 182 MobiDBLite consensus disorder prediction 28 48 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03765 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
141678 Smso10g00793 Smso1g03765
149243 Smso1g03765 Smso20g00921
338037 Smso28g00388 Smso1g03765
357450 Smso1g03765 Smso28g00388
429131 Smso1g03765 Smso28g00388
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:125018473 Smso10g00793 Smso-Chr10:8454681 wgd
Smso Smso-Chr1:125018473 Smso20g00921 Smso-Chr20:15786488 wgd
Smso Smso-Chr1:125018473 Smso28g00388 Smso-Chr28:9992550 wgd