AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso20g01622 ATGTATTCTTGGTGGTGGAACAGTCACATTAGCCCCAAGAATTCAAAATGGCTTCAAGAAAATCTTACAGATGTCGATATCAAAGTGAAGGCAATGATAAAGCTCATTGAAGAAGAAGCAGATTCATTTGCTAGAAGGGCAGAAATGTACTACAAAAAGCGTCCAGAGCTTATGAAACTGGTGGAAGAGTTATACAGAGCATATCGGGCTTTAGCAGAAAGATATGATCATGCAACTGGGGCCCTTCGTCAGGCCCACAAAACAATGAGTGAAGCATTTCCAAATCAAGTACCCGCAGGGTGTGACGACTCAACTCCTAATTCTCCCTATGATTCGGATCCTCAGACCCCAAGGACCATAACAATTCCATGTTTTGACCCTGATGACTTGCAGAAAGACGGGTCAACAGGAACAGCAAGAAAAGTCCTCAGTTTCAGTGATTCAGAAGATGGCAATAATAAACACAGGTCCCATGATCGAGATCTATCTCAGTTTGAGAGCGTAGGGGTAAATGACAAAGAACTCCTTTTATTAAAAGAGGCCCTAGCCAAATTAGAAGATGAAAAAGAAGCTGGCATGAAGCAGTACCTCGAGAGTTTGGATAAATTATCAAAACTTGAGTCCGAGATCTTAAAATCACAAGAAGATTCTAGAGAACTTGCTGACCGTGCAAGCAAGGCTGAGACTGAATCCCAAAAAATGAAAGAAATGCTGCAAAGTTTAGAAGCTGAAAAGGAAGAAAGCCTTGAGCTTTACCATCAGGCCCAAAAGAAAATCGAGGAAATCAATGAGCAAAATTTGAAAGAAGAAATTGAAAGATTAAAAGTTGAAAGGGATGCTGCTTATGATCAGTACAAACAATCTGTGAGTCTGCAATCAGATTTGGAGCAGAAATTACTAGAAGCAGAGAAGGAAATTGAAACATTGAAGCTAGCAATTGTTAAATTAATCAAAGAGAAAGAAGCGCAAGCTATTTTATACCAACAATGCATGGAGACTATTTCAAGCCTCGAGCTTAGACTTGTTTGTGCACAAGAAGAAACCGAAAGGCTGAAAACCGAAATCGATAATGGAATTTCACTTTTAAAAGGTGCAGAAGAACAACGACTAATGCTAGAAAGGTCAAACAAGAGTCTTCACATGGAATTGGAGTCAATGGGGGCCAGAATCGGGAATCAAAATCAAGAAATTACAGAGAAACAGAAGGAATTAGGGAGATTATGGACTTGCATACAAGAAGAACGATTACGGTTTGTGGAGGCTGAGACTGCTTTCCAAACATTACAGCAATTACATGCCCAATCTCAAGAAGAATTAAGATCAATGGTAGGCGAGTTACAAAACCGGGCTCAAGTATTACGGGAAATTGAAGCCCGCAACCAAGTTTTAGAGGGAGAGATACAAAAGAAAATTGAGGAGAACAAGAACCTCAACGAGCTCAACTTATCTTCTGCCATTTCATTGAAAGAAATGCAGGCAGAAATCAGTAGCTTAAAGGTATCTAACTGGAAACTCGAGGAAGAGGTTGACCTTCGAGTTGACCAAAGAAACGCTCTTCAGCAAGAGATATACTGTTTAAAAGAGGAACTCAACGACTTGAACAAGAAACACGGGTCGATTTTGGAGCAAGTTACTTATGTCGGGTTGAACCCGGAAAGCTTAGGCTCGTCTGTAAAGGAGTTACAGGACGAGAAATCTAATTTGAAAGAAGAATGGCAAAAAGAAAAGGCAGCAAAAGCGGCTCTTTTGGAGAAACTGGAAATCATGGGTCAACTTCTTGAGAGAAATGTTGTTTTGGAAAATTCTTTATCAGATTTGGGTGCTGAATTGGAAGGGTGTGCACTTATAAGTGAAAAGGATACTCTAGTCTCACAGATTGAAATTACTGAAAAATGCTTGAAGGATCTGGAGATCCCACAATCTGAAACCGAAAATGAGAAGGGTGGTGAATCTGCAACCATGGAGCGCGATGCATTTGTTGAGTTGCGGAGTCTTCAAAGCAAGGTTAAAGTTATTGAAATGGCTGTAGCCGAGATGCAAACGCTCTCAGGGCAACAGAAGTTGGATGCAGATGCAAAGCTGGAATCCGCAATGATGCAGATCAAAGAATTGAGTCAGCAAAAGAACTCCTACAAGCCAAACGGTAAACCAAAATCAACATCCGAAATCTCAGAACCAGATCCAAAAGATATCATGCTCGATCAAGCCTCTGAATGTTCATCATACGGTGTAAGCAAAAGAGGATTAACCGAAGGCGAGATTTGGGAAACCGCCGATGATTCCAAAACTACGTTCAAACACCATCCTACAGCTTCCGACGTCTCTCTCGATAACATCATGGATAAACTAGAAGTTTCCAGAAGATTCAAGGAGCCCCGTGAAGACGGAAACAAGAGGAAAGTTCTCGAACGACTCAATTCTGATGTTCAAAAATTGACAAATCTTCAAATCACAATCGACGATTTGAAACGGAATGTCGAGATTACATTAAAGAGCAGACTGGGAAATGGAAAAGCAATGATCAAATGTGAAACATTGAAAAGCCAACTCACGGAAGCCGAATCCGCCATCGAGAAGCTATACGAGCTCAACGCGCGATTAGTAAAACATGTCGAAGGTAACTCCGAGAAATCATCGACATCAGAATCTGGAGAAAGTGAAAGTACGAGAAGAAAAAAAGTGTCGGAACAAGCGAAACTGGTTTCTGAACAGATCGGTCGATTGCAATTAGAGATACAAAAGATACAGTTTGCGTTGGTGAAACTTGACGATGAGAACGAACCGACTGGAAAGGCGAGGTTTCCCGACACCAAAAAACGGGTTGTTTTGAAAGATTATCTTTACGGCGGTGGAAGAACAAAAACAACGATTGGCGGCAGCAGGCGGAAGAAAGGTCACTTTTGTGGTTGCGTCGAGCCTTCGACTAAAGGAGACTAG 2937 41.3 MYSWWWNSHISPKNSKWLQENLTDVDIKVKAMIKLIEEEADSFARRAEMYYKKRPELMKLVEELYRAYRALAERYDHATGALRQAHKTMSEAFPNQVPAGCDDSTPNSPYDSDPQTPRTITIPCFDPDDLQKDGSTGTARKVLSFSDSEDGNNKHRSHDRDLSQFESVGVNDKELLLLKEALAKLEDEKEAGMKQYLESLDKLSKLESEILKSQEDSRELADRASKAETESQKMKEMLQSLEAEKEESLELYHQAQKKIEEINEQNLKEEIERLKVERDAAYDQYKQSVSLQSDLEQKLLEAEKEIETLKLAIVKLIKEKEAQAILYQQCMETISSLELRLVCAQEETERLKTEIDNGISLLKGAEEQRLMLERSNKSLHMELESMGARIGNQNQEITEKQKELGRLWTCIQEERLRFVEAETAFQTLQQLHAQSQEELRSMVGELQNRAQVLREIEARNQVLEGEIQKKIEENKNLNELNLSSAISLKEMQAEISSLKVSNWKLEEEVDLRVDQRNALQQEIYCLKEELNDLNKKHGSILEQVTYVGLNPESLGSSVKELQDEKSNLKEEWQKEKAAKAALLEKLEIMGQLLERNVVLENSLSDLGAELEGCALISEKDTLVSQIEITEKCLKDLEIPQSETENEKGGESATMERDAFVELRSLQSKVKVIEMAVAEMQTLSGQQKLDADAKLESAMMQIKELSQQKNSYKPNGKPKSTSEISEPDPKDIMLDQASECSSYGVSKRGLTEGEIWETADDSKTTFKHHPTASDVSLDNIMDKLEVSRRFKEPREDGNKRKVLERLNSDVQKLTNLQITIDDLKRNVEITLKSRLGNGKAMIKCETLKSQLTEAESAIEKLYELNARLVKHVEGNSEKSSTSESGESESTRRKKVSEQAKLVSEQIGRLQLEIQKIQFALVKLDDENEPTGKARFPDTKKRVVLKDYLYGGGRTKTTIGGSRRKKGHFCGCVEPSTKGD 978
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso20g01622 978 MobiDBLite consensus disorder prediction 704 721 - -
Smso20g01622 978 Coils Coil 327 354 - -
Smso20g01622 978 MobiDBLite consensus disorder prediction 212 233 - -
Smso20g01622 978 Coils Coil 175 195 - -
Smso20g01622 978 PANTHER PROTEIN NETWORKED 4A 265 675 IPR051861 -
Smso20g01622 978 MobiDBLite consensus disorder prediction 147 165 - -
Smso20g01622 978 MobiDBLite consensus disorder prediction 704 728 - -
Smso20g01622 978 Coils Coil 843 863 - -
Smso20g01622 978 Coils Coil 558 589 - -
Smso20g01622 978 Coils Coil 488 508 - -
Smso20g01622 978 Coils Coil 687 707 - -
Smso20g01622 978 Coils Coil 516 536 - -
Smso20g01622 978 MobiDBLite consensus disorder prediction 94 165 - -
Smso20g01622 978 Coils Coil 292 319 - -
Smso20g01622 978 Coils Coil 453 480 - -
Smso20g01622 978 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 2 82 IPR011684 GO:0003779(InterPro)
Smso20g01622 978 Coils Coil 805 825 - -
Smso20g01622 978 Pfam KIP1-like protein 3 76 IPR011684 GO:0003779(InterPro)
Smso20g01622 978 Coils Coil 203 284 - -
Smso20g01622 978 MobiDBLite consensus disorder prediction 872 896 - -
Smso20g01622 978 MobiDBLite consensus disorder prediction 100 119 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso20g01622 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
149228 Smso1g03734 Smso20g01622
149666 Smso20g01622 Smso28g00413
429104 Smso1g03734 Smso20g01622
429659 Smso20g01622 Smso28g00413
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr20:53686744 Smso26g01528 Smso-Chr26:21340334 dispersed
Smso Smso-Chr5:103008759 Smso20g01622 Smso-Chr20:53686744 dispersed
Smso Smso-Chr1:124085910 Smso20g01622 Smso-Chr20:53686744 wgd
Smso Smso-Chr20:53686744 Smso28g00413 Smso-Chr28:11034178 wgd
Smso Smso-Chr20:53686744 Smso29g01425 Smso-Chr29:39327033 wgd