AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso20g01741 ATGCTCAATGTCTTCAACAAAAGCCTCCGGCGACTCTGCTCAAAGCTCCGGTGGCCGGTGCGCCGCCGTGCAAAGCCCAAAGTCATCATCAAAAGGTTTGGAAAGTCAAACTCTAGAGGTCAAGATTCATCAAACACAAATGGGTCAGCCACAATTCACCCAAATAATCATTTGGGTATTTCAAAATCAGAAACCCCACTTCGAATTGCAACTTTTAATGCTGCTTTATTCTCCATGGCACCAGCAGTCCCAGAGTTGACCAAAAAAGCTTCAAGCTTTGACCTTGGCAAAGATGATCAAGATTTCACAAAGGTAACCTCTGATTCCTCAGTTTCTTACACTAATTCAAGATCAAAATCAATGGTTGAAAGACCCAAAAGCATATTAAAACAATCACCATTGCATTTAAGTAGTTCAGAAACTCTATCAAAGCAGCAAAAATTTGCAAAGTCAAAGCTTAGAGTATCGATTAATTTACCCGATAACGAGATCTCATTGAAGAGAAGTGGGCAGTTGAGCTTAGTTGTAGATGAAACCAAAACTGACCCGAGTTTAAAAACTAGTGATTCTAAGGGTATAAGCAAGATTTTGAAAGGAAAGGGTGTTTTGGGATCACAAAACAGTTTTTCTTCAAGAGAAGTTGAAAGTCAAAGGGGAAGTTACCGGTCAACGAAGACTGTTCTTGAAGTTTTGAAAGAATTGGATGCAGATATATTGGCTCTACAGGATGTAAAAGCTGAGGAAGAAAAGGATATGAAGCCATTGTCTGATTTGGCTGCTGCTTTGGGTATGAATTATGTGTTTGCTGAGAGTTGGGCACCAGAATATGGTAATGCAGTTCTGTCAAAGTGGCCGATTAAACGATCTAAAGTTCAGAAAATTTTTGATGATTCGGATTTCAGGAATGTTTTAAAGGCGACAATTGATGTTCCCCAAACCGGAGAAGTTGATTTTCATTGTACCCTTCTTGATCATCTTGATGAGAATTGGCGAATGAAACAAATAAGTGCAATAATCGAATCTAGTGAGAGACCACACATCTTAGCCGGAGGTATCAATTCTCTTGATGAAACAGACTACTCGCCCGAAAGATGGACCGACATTGTTAAGTACTATGAAGAAATGGGAAAACCAACACCAAAAGTTGAAGTGATGAAGTACTTAAAGGACAAACGGTACACCGATGCTAAGGACTCTGCTGGCGAATGTGAATCTGTAGTGATTATTGCTAAAGGCCAAAACGTGCAGGGTACTTGCAAATATGGCACTAGGGTAGATTACATATTGGTGTCCCCTGATTCTCCCTACAAGTTTGTTCCCGGTTCATATACGGTTTTGTCATCAAAAGGTACTTCTGACCATCATATAGTCAAAGTTGATGTAACGAAGGTAGACGGATCTGGTCAACAACCGTATGTTAGGAGGCATAGACATCCTAAACAAAAAGTTGTGAAGATTATGAATTCTAATTCATCAAAAGGGGTATGGAAAGTGCAAACTTTATACAGATAG 1512 39.68 MLNVFNKSLRRLCSKLRWPVRRRAKPKVIIKRFGKSNSRGQDSSNTNGSATIHPNNHLGISKSETPLRIATFNAALFSMAPAVPELTKKASSFDLGKDDQDFTKVTSDSSVSYTNSRSKSMVERPKSILKQSPLHLSSSETLSKQQKFAKSKLRVSINLPDNEISLKRSGQLSLVVDETKTDPSLKTSDSKGISKILKGKGVLGSQNSFSSREVESQRGSYRSTKTVLEVLKELDADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQISAIIESSERPHILAGGINSLDETDYSPERWTDIVKYYEEMGKPTPKVEVMKYLKDKRYTDAKDSAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPDSPYKFVPGSYTVLSSKGTSDHHIVKVDVTKVDGSGQQPYVRRHRHPKQKVVKIMNSNSSKGVWKVQTLYR 503
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso20g01741 503 Gene3D Endonuclease-exonuclease-phosphatase 207 463 IPR036691 -
Smso20g01741 503 MobiDBLite consensus disorder prediction 105 122 - -
Smso20g01741 503 MobiDBLite consensus disorder prediction 36 60 - -
Smso20g01741 503 Coils Coil 231 251 - -
Smso20g01741 503 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 13 460 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Smso20g01741 503 MobiDBLite consensus disorder prediction 31 60 - -
Smso20g01741 503 MobiDBLite consensus disorder prediction 105 125 - -
Smso20g01741 503 FunFam Endonuclease-exonuclease-phosphatase family protein 211 464 - -
Smso20g01741 503 Pfam Endonuclease-Exonuclease-phosphatase family 219 454 IPR005135 GO:0003824(InterPro)
Smso20g01741 503 SUPERFAMILY DNase I-like 224 461 IPR036691 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso20g01741 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
429086 Smso1g03705 Smso20g01741
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:123457957 Smso20g01741 Smso-Chr20:59122834 wgd
Smso Smso-Chr20:59122834 Smso29g01523 Smso-Chr29:41756268 wgd