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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso20g01800 ATGAAACGAGAAGCATCCCCTTATCCAAGGAGTTTTTGGACCTCCATCGATGATGGTTTCTGGGTGAAAAAGCCAACACAGACCACCACACACAATCCCAACATCATGACGACTTTGATGGCATTCAAATTGTCGTCTTTCTCATCCGGTGCTCCACCAATTCCTGCACATTCTTCAATTTCATTTTCTTCAAAGAAATTCTTTCTTCCACTCAAGTTTACTCCTCGCCGTTCTACATTTCCAAGAATTTATGCATTTTCTAGTAATGATATCAAGGTGGGTTCCAACATTGAGGTAGATGGAACTCCTTGGAAGGTTATAGAGTTTCTTCATGTGAAGCCGGGTAAAGGGGCGGCTTATGTAAGGACCACGCTACGGAATTATGTCACAGGAAACTCTGTTGAGAAAACTTTCAGAGCTGGAAGCAAGATTGAACAAGCTGAGATCTCCAAGGAGACGAAACAATTCACATACAAAGATGGTTCACAGTTTGTTTTCATGGATTTGACTTCATACGAGGAGGTTCGTCTTAATGAGTCAGATATGGGAGACAAGACGAAATGGCTAAAAGAAGGCATGGATTGCATTTTGCTATTTTGGAAGGGAAAGGTTATCGATTTTGAGCTCCCGATACAGGTTAAGGTGAAAGTGGTCGAGGTTGATCCTGGTTTGAAAGGTGACACGGCTCAAGGTGGATCAAAACCAGCCACTGTAGAAACAGGTGCTGTGGTGAGTGTCCCTTTGTTTGTAGACAGAGGTCAAGAAATTATTGTGGATACAAGGACCGGGCAGTACGTGAGTCGTGTCTGA 810 43.21 MKREASPYPRSFWTSIDDGFWVKKPTQTTTHNPNIMTTLMAFKLSSFSSGAPPIPAHSSISFSSKKFFLPLKFTPRRSTFPRIYAFSSNDIKVGSNIEVDGTPWKVIEFLHVKPGKGAAYVRTTLRNYVTGNSVEKTFRAGSKIEQAEISKETKQFTYKDGSQFVFMDLTSYEEVRLNESDMGDKTKWLKEGMDCILLFWKGKVIDFELPIQVKVKVVEVDPGLKGDTAQGGSKPATVETGAVVSVPLFVDRGQEIIVDTRTGQYVSRV 269
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso20g01800 269 FunFam Elongation factor P 148 211 - -
Smso20g01800 269 ProSitePatterns Elongation factor P signature. 234 253 IPR013852 -
Smso20g01800 269 CDD S1-EF-P-repeat-1 155 210 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Smso20g01800 269 FunFam Organellar elongation factor P 79 147 - -
Smso20g01800 269 Gene3D - 148 210 IPR012340 -
Smso20g01800 269 Pfam Elongation factor P (EF-P) OB domain 155 205 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Smso20g01800 269 NCBIfam elongation factor P 87 269 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Smso20g01800 269 Hamap Elongation factor P [efp]. 85 269 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Smso20g01800 269 FunFam Elongation factor P 212 269 - -
Smso20g01800 269 Pfam Elongation factor P (EF-P) KOW-like domain 87 144 IPR013185 -
Smso20g01800 269 SUPERFAMILY Nucleic acid-binding proteins 213 269 IPR012340 -
Smso20g01800 269 Gene3D - 79 147 IPR014722 -
Smso20g01800 269 SMART Elong-fact-P-C-2 213 268 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Smso20g01800 269 Pfam Elongation factor P, C-terminal 213 268 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Smso20g01800 269 Gene3D - 212 268 IPR012340 -
Smso20g01800 269 PANTHER ELONGATION FACTOR P 59 269 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Smso20g01800 269 SMART EFP-2 151 205 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Smso20g01800 269 SUPERFAMILY Nucleic acid-binding proteins 149 213 IPR012340 -
Smso20g01800 269 SUPERFAMILY Translation proteins SH3-like domain 82 145 IPR008991 -
Smso20g01800 269 CDD S1-EF-P-repeat-2 213 268 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso20g01800 K02356 elongation factor P
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Event-related genes

Select Gene_1 Gene_2 Event_name
346421 Smso20g01800 Smso1g03544
429011 Smso1g03544 Smso20g01800
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5025333 Smso Smso1g03544 Smso-Chr1:120301988 Smso20g01800 Smso-Chr20:61076355
5078173 Smso Smso20g01800 Smso-Chr20:61076355 Smso29g01570 Smso-Chr29:42712998