AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso21g01316 ATGCCCAAGACAATTCCATCTTTACAAGAAAACAAAAAACCGTTCCATCGGAGGAACGGTTCTGGCGAGATCCATGTCTTTGAATCCGCTCGGTACTTTGAAAGCACCAGCACCACCCTCTCTCATAAACATTACATGAGAGAGGGTGGTGGAAGACTGAGTCTTGATATCCCTAACACTAGAAGAAACTCGATTCCGTTACAAGCCATGATGATGGAAAACCGGCACTCGGTTCCGTTACAAAGCATGATAATGGATCAAAGCCCCATGATCAAGAATGATAAGAAGCATAAACAACCAAGCTCACCAGGAGGAAAGTTGGCTCATTTCTTGAACTCCCTTTTCAACCAAACATCTTCTAAGAAGTCAAAGTCCAAGTCAAAGTCAACAACATCAACACATTCTATGAAAGATGAAGATGAGAGCCCTAGTGGTTGGAGAAGGAAGAGGAGGAGTAGCATTAGCCTTTTCAGGAGTGGAAATAGCAATTCCACCATTAATGTAAGTGACACAAAATCTTCTTATTCAAGAACACTACCACAACAACCACCCACAAAGAGTTCAACTTATAAAGATCTCAAAACCCATTCAGACCAAAAGCCATGTGAAATTACCAAAATACCCCTCAATGAAAACCATAACAAGAATGAAAATCTAATGATCAAAAGTGGGCTTCCGGAGCAAAAAAGAAGTTTTGGAAAACATGATGATGATGATCATCATAAGAAGCATGATCCAACGGTGGAGATTAGAGAACTCAAAAGTTTCATTCTTGATGATGATGATGGAGACAGTGATTCAAGTTCTGATCTTTTTGAGTTAACAAACTGTGATCTGGGTTACTATTCAAGTGGTTTGCCAGTTTTTGAAACAACCCATATGGATAGCATCAAGAGGGGTGCACCAATCTCTAGCTAA 918 40.2 MPKTIPSLQENKKPFHRRNGSGEIHVFESARYFESTSTTLSHKHYMREGGGRLSLDIPNTRRNSIPLQAMMMENRHSVPLQSMIMDQSPMIKNDKKHKQPSSPGGKLAHFLNSLFNQTSSKKSKSKSKSTTSTHSMKDEDESPSGWRRKRRSSISLFRSGNSNSTINVSDTKSSYSRTLPQQPPTKSSTYKDLKTHSDQKPCEITKIPLNENHNKNENLMIKSGLPEQKRSFGKHDDDDHHKKHDPTVEIRELKSFILDDDDGDSDSSSDLFELTNCDLGYYSSGLPVFETTHMDSIKRGAPISS 305
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso21g01316 305 MobiDBLite consensus disorder prediction 116 130 - -
Smso21g01316 305 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 29 298 IPR039621 GO:0009734(InterPro)
Smso21g01316 305 MobiDBLite consensus disorder prediction 155 190 - -
Smso21g01316 305 MobiDBLite consensus disorder prediction 131 148 - -
Smso21g01316 305 MobiDBLite consensus disorder prediction 116 203 - -
Smso21g01316 305 MobiDBLite consensus disorder prediction 1 22 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso21g01316 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
150759 Smso21g01316 Smso4g01352
345018 Smso21g01316 Smso4g01352
355681 Smso4g01352 Smso21g01316
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr21:13940641 Smso4g00453 Smso-Chr4:5950083 dispersed
Smso Smso-Chr21:13940641 Smso4g01352 Smso-Chr4:18374173 wgd