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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g01857 ATGGAGAAGCAAAAGATTGTGGTGAAGGTGAGCATGAACGGTGACAAGAAAACCCGTAAAGCCATGCAGATCGCCGTTAGTATCTCAGGGGTGGAATCGGCGTCTTTTGTTGGGTCAGATAAAGACCAGATAGCGGTGACTGGTGCAGGTATTGACTCGGTTGAACTGACGACGTTACAAAGGAAAAAGGTGGGATACACAGAGCTAGTGAGTGTCGGTCCGGTTGAGGAAAAGAAACCGGATGCCAAGCCAGCTGAGGTGAAAGTGCAAGTGGATCCATACCAGTACTACTATCAAAGCTATGGCGTGCCTTATTATCATTTTGTATATTAG 333 46.85 MEKQKIVVKVSMNGDKKTRKAMQIAVSISGVESASFVGSDKDQIAVTGAGIDSVELTTLQRKKVGYTELVSVGPVEEKKPDAKPAEVKVQVDPYQYYYQSYGVPYYHFVY 110
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g01857 110 PANTHER OS04G0464100 PROTEIN 4 87 IPR044296 -
Smso26g01857 110 Gene3D - 1 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g01857 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr25:13107330 Smso26g01857 Smso-Chr26:35509053 dispersed
Smso Smso-Chr26:35509053 Smso26g01859 Smso-Chr26:35740898 dispersed
Smso Smso-Chr26:35343305 Smso26g01857 Smso-Chr26:35509053 proximal
Smso Smso-Chr26:35509053 Smso26g01858 Smso-Chr26:35733049 tandem