AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g01871 ATGGCGCTTTTCAACGGCGTCGACTACAATCTCGAATACCGGTCGAAGAAAGACGAAACGTGGTACACATGCGGCGTCGTTCTCGAAGACGGAAAGCAGCTCTGTGTGATGTTCAAGGATTTCATTCAGAGTTACTTCGACGAGGTTTACTCCATCGCCGATTTCTGGACTCACCATGAAATCGAACAATTTCTGAAACGATTCCGTCCAGTCTCCGGGATGATCGAGGATAATGAGTGTTCTAGAGTGATTGAAGGCATGAAGGTCTGTGCTATGTACAAAGGCGCCGATGAAGTTCTATATTTTGACGCCATTGTTGATGCTGTGCATCATAAAGAGCATACGCCTGAGAAGTGTTTATGCACTTATTTACTATTCTGGCAGCATGGTCCTGGGGTCTCTTTTCAATCACAGGTGTTTGGCAGTGTGGGATGCAGGAGGGAAAGATCATGCCCTGAATTAAGTGATCATGATATAGATTTGGGAGGTGATAAAAAACCTGATTGTTATCATTATTGTATTGTATTGGAAAACTTGGATAAAGATTTATGCCCATTGTTAATGATGGATTTCATACACGAGCATACTTCAATCACAACACAAACATTTGTTTTTCCAAGTTTGTTAGCAGAAACATATGCAAGAGGTGCAATCGTGGTGGATAGCAGTATAAAGTTGAAGAGGATTTATGAATTTATAAACAATCCAAATCACTTCATTACATCTTTCTCAGGAAGGCCATGA 744 41.26 MALFNGVDYNLEYRSKKDETWYTCGVVLEDGKQLCVMFKDFIQSYFDEVYSIADFWTHHEIEQFLKRFRPVSGMIEDNECSRVIEGMKVCAMYKGADEVLYFDAIVDAVHHKEHTPEKCLCTYLLFWQHGPGVSFQSQVFGSVGCRRERSCPELSDHDIDLGGDKKPDCYHYCIVLENLDKDLCPLLMMDFIHEHTSITTQTFVFPSLLAETYARGAIVVDSSIKLKRIYEFINNPNHFITSFSGRP 247
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g01871 247 Pfam SAWADEE domain 8 138 IPR032001 GO:0003682(InterPro)
Smso26g01871 247 PANTHER SAWADEE PROTEIN 154 247 - -
Smso26g01871 247 Gene3D - 75 147 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g01871 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
431855 Smso26g01871 Smso29g00140
431856 Smso26g01871 Smso7g00108
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr13:8611070 Smso26g01871 Smso-Chr26:36191665 wgd
Smso Smso-Chr26:36191665 Smso29g00140 Smso-Chr29:2281170 wgd
Smso Smso-Chr26:36191665 Smso7g00108 Smso-Chr7:1927254 wgd