AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso26g01875 | ATGCATCCATCATCGGCGTTCTCTCTTCTCATCCTCTTCACAATCATTCTATCCACCACCACCACAAATGCTCACAACATCACCCGTATCCTCGAAAAAAACCACGAATTCTCAACCTTCAACCACTACCTCACCCTCACTCACCTCGCCGGAGAAATCAACCGTCGCCAGACCATAACCGTCTGCGCCGTCGACAATGCCGCCATGTCAACGTTGATCGCCAAAGGCCTCTCACTCGAAACCATAAAGAACGTTCTCTCGCTCCACGTCTTCGCCGACTACTACGGCACCAAAAAGCTCCACCAGATCACCAAAGGCTCCACCTCCACTGCCACCATGTACCAAGCCACCGGCGAAGCCCCTGGCACAACCGGCTTCGTTAACATCACCGACGTCAAAGGCGGCAAAGTCCAATTCACTCCAGAAGACAATCCTTCTCAAACCGACGTCGTTTACGTCAAATCAATTTTAGAAATGCCGTACAACATCTCCGTCATTCAAATCAGTCAAATATTAAGCTCGCCGGAGGCGGAGGCGCCGACATCCGCACCAGATCTGAACTTAACGTCGTTGCTACAACGAGACGGTTGCAAGGCGTTTTACGATCTGTTATTAACTTCGGGAGCTATCGGAACGTTTTTAAGCACCGTTGACGGCGGAGTAACGGTGTTTTGTCCAAGTGACGACGCCGTTAAGTCGTTCGCGCCTAAATACGAAAACCTAACGGCGGAAGGTAAGACGTCGTTACTGCTTTACCACGGCGTTCCGATTTACAATTCCATGGGAATGTTGAGATCTAGCAATGGCTTGATGAACACGTTAGCGACGGAAGGGGCGAATAAGTACGATTTTACGGTGCAAAACGACGTGGCGATTTATCGGATTGATAAGGTTTTGATGCCTCGGGAGTTGTTGAAGGGTTTGGTGGTGGCGGATGAACCAGCACCGGCGCCCAAGGGAGCGAAGAAGAAGGCGTCGAAGAAGGGTGAGGATGCGGGAGCTCCCGGGCCGGATTCTTCGAATGATTATGGTGACGATGGTGCGGCGGTTCAGAAGGCTAATTCCGGTGGAAAGCTGGGAGCGTCGGTGGTTATGGCGTTGTTTCTCGTCGTCGCGTTCTTGTGA | 1125 | 51.64 | MHPSSAFSLLILFTIILSTTTTNAHNITRILEKNHEFSTFNHYLTLTHLAGEINRRQTITVCAVDNAAMSTLIAKGLSLETIKNVLSLHVFADYYGTKKLHQITKGSTSTATMYQATGEAPGTTGFVNITDVKGGKVQFTPEDNPSQTDVVYVKSILEMPYNISVIQISQILSSPEAEAPTSAPDLNLTSLLQRDGCKAFYDLLLTSGAIGTFLSTVDGGVTVFCPSDDAVKSFAPKYENLTAEGKTSLLLYHGVPIYNSMGMLRSSNGLMNTLATEGANKYDFTVQNDVAIYRIDKVLMPRELLKGLVVADEPAPAPKGAKKKASKKGEDAGAPGPDSSNDYGDDGAAVQKANSGGKLGASVVMALFLVVAFL | 374 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso26g01875 | 374 | SMART | fasc-3 | 222 | 302 | IPR000782 | - | |
| Smso26g01875 | 374 | SMART | fasc-3 | 60 | 175 | IPR000782 | - | |
| Smso26g01875 | 374 | MobiDBLite | consensus disorder prediction | 317 | 331 | - | - | |
| Smso26g01875 | 374 | PANTHER | FASCICLIN-LIKE ARABINOGALACTAN PROTEIN | 7 | 368 | IPR033254 | GO:0046658(PANTHER) | |
| Smso26g01875 | 374 | SUPERFAMILY | FAS1 domain | 30 | 175 | IPR036378 | - | |
| Smso26g01875 | 374 | MobiDBLite | consensus disorder prediction | 314 | 349 | - | - | |
| Smso26g01875 | 374 | Gene3D | FAS1 domain | 23 | 172 | IPR036378 | - | |
| Smso26g01875 | 374 | Gene3D | FAS1 domain | 188 | 302 | IPR036378 | - | |
| Smso26g01875 | 374 | FunFam | Fasciclin-like arabinogalactan protein 2 | 23 | 165 | - | - | |
| Smso26g01875 | 374 | Pfam | Fasciclin domain | 196 | 289 | IPR000782 | - | |
| Smso26g01875 | 374 | Pfam | Fasciclin domain | 36 | 128 | IPR000782 | - | |
| Smso26g01875 | 374 | SUPERFAMILY | FAS1 domain | 181 | 302 | IPR036378 | - | |
| Smso26g01875 | 374 | ProSiteProfiles | FAS1-BIgH3 domain profile. | 24 | 172 | IPR000782 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso26g01875 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 148151 | Smso18g01547 | Smso26g01875 | |
| 152815 | Smso26g01875 | Smso9g00701 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr16:73164811 | Smso26g01875 | Smso-Chr26:36312934 | dispersed | |
| Smso | Smso-Chr26:36312934 | Smso3g00260 | Smso-Chr3:4696750 | dispersed | |
| Smso | Smso-Chr1:90398267 | Smso26g01875 | Smso-Chr26:36312934 | wgd | |
| Smso | Smso-Chr13:8440754 | Smso26g01875 | Smso-Chr26:36312934 | wgd | |
| Smso | Smso-Chr18:73399290 | Smso26g01875 | Smso-Chr26:36312934 | wgd | |
| Smso | Smso-Chr25:16235372 | Smso26g01875 | Smso-Chr26:36312934 | wgd | |
| Smso | Smso-Chr26:36312934 | Smso9g00701 | Smso-Chr9:16311949 | wgd |