AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g01886 ATGGCTACACAAATCAGCCCCTGTTCTTCATCTTCCACCACCTTCTCACCTTCTTCACTGAATCAAGAACCCTTTTCTTCTGCAAAGCTCGTCAATTTCTCAAGAAAATCATCTCCCTCCAGATGGGTTTTCAAGATTCATTCAAGAATCAATCCCAAAAACCAGTTTGAACTCAAATCCTCAAATGGGTATCCTCTCAATGCAGTTTCTTTGCAGGATGGTGCAGCAGAGAAGCCATTAGCAAAAGAAATTGTATTGCCAGAACAAACCGAATCCAATCTTAGTGTAACTGTTGTGGGTGCTTCGGGTGATCTAGCGAAAAAGAAAATCTTTCCGGCCCTTTTTGCTTTGTTTTATGAAGATTGTTTACCTCGGAATTTTGTCATATTTGGTTATGCGAGAACTAAAATGACCGATGAGGAACTGAGGGAGACGATAAGTAGAACATTAACTTGCAGAATTGATAAGAGAGAGAACTGTGGTGACAAAATGGAAGAGTTTCTTCAAAGATGCTTTTACCATTCAGGTCAATACAACTCTGAGGAAAATTTTGCAGAATTGGATAGTAAGCTAAAACATAAAGAGGATGGAAAATTGTCGAATAGGTTGTTTTATTTGTCAATACCTCCAAACATTTTTGTGGATTCGGTACGGTGTGCCAGTGGCAAAGCTTCTTCAAAAACCGGGTGGACAAGGGTAATTGTGGAAAAACCGTTTGGGCGTGACTCGGAATCTTCTGCAGAGTTAACGAGAAGCTTGAAGAAGTACTTAGCTGAGGATCAAATCTTTAGGATTGATCATTATTTGGGAAAGGAGCTAGTAGAGAACTTATCAGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCAAGAAACTACATTCGAAACGTACAATTTATATTTTCTGAAGATTTTGGTACAGAAGGGAGAGGAGGATACTTTGACAACTATGGTATCATTCGTGATATAATGCAAAATCACCTATTGCAAATATTAGCATTGTTTGCAATGGAAACACCTGTGAGTTTGGATGCCGAGGACATTAGAAATGAGAAGGTCAAAGTTTTGAAATCAATGAGACGCCTGAAACTTGAAGATGTAGTCATTGGTCAATACAAAGGCGGAAAGTCATATTTGGGATATACAGAAGACCCCACCGTCCCAAACGATAGCTTAACTCCAACTTTTGCTGCAGCAGCTCTCTTTATTGATAATGCTCGGTGGGATGGCGTTCCTTTTCTTATGAAAGCCGGGAAGGCCCTCAATACTAGACGGGCAGAGATCAGAGTTCAATTTAGACATGTTCCAGGCAACCTATACAAGAAAAACTTTGGGATGGATATGGATAAGGCTACAAACGAGCTTGTGCTTCGTGTACAGCCCGATGAAGCCATTTATCTCAAGATTAATAATAAGGTTCCTGGTCTTGGAATGAGGCTTGACCGAAGTGACCTTAATTTACTCTACAGTATGAGGTACCCAAAGGAAATCCCGGATGCATACGAGAGGCTTTTGTTGGATGCAATAGAAGGAGAAAGAAGATTGTTCATAAGAAGTGATGAGCTTGATGCTGCTTGGTCTATATTTACACCATTATTGAAAGAACTCGAAACAAAGAAAATTGCACCGGAATTGTATCCTTATGGCAGCAGAGGGCCGGTCGGAGCTCATTATCTGGCGGCAAAGTACAATGTCCGGTGGGGAGATGTCACCGGAGAAGAATGA 1731 40.61 MATQISPCSSSSTTFSPSSLNQEPFSSAKLVNFSRKSSPSRWVFKIHSRINPKNQFELKSSNGYPLNAVSLQDGAAEKPLAKEIVLPEQTESNLSVTVVGASGDLAKKKIFPALFALFYEDCLPRNFVIFGYARTKMTDEELRETISRTLTCRIDKRENCGDKMEEFLQRCFYHSGQYNSEENFAELDSKLKHKEDGKLSNRLFYLSIPPNIFVDSVRCASGKASSKTGWTRVIVEKPFGRDSESSAELTRSLKKYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLKSMRRLKLEDVVIGQYKGGKSYLGYTEDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKKNFGMDMDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLYSMRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELETKKIAPELYPYGSRGPVGAHYLAAKYNVRWGDVTGEE 576
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g01886 576 Gene3D - 90 264 - -
Smso26g01886 576 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 279 569 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 FunFam Glucose-6-phosphate 1-dehydrogenase 90 264 - -
Smso26g01886 576 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 266 569 - -
Smso26g01886 576 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 266 272 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Smso26g01886 576 PRINTS Glucose-6-phosphate dehydrogenase signature 308 325 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 PRINTS Glucose-6-phosphate dehydrogenase signature 232 245 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 PRINTS Glucose-6-phosphate dehydrogenase signature 326 342 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 PRINTS Glucose-6-phosphate dehydrogenase signature 409 435 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 PRINTS Glucose-6-phosphate dehydrogenase signature 256 284 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 279 IPR036291 -
Smso26g01886 576 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 93 571 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 90 568 IPR001282 GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 MobiDBLite consensus disorder prediction 1 22 - -
Smso26g01886 576 FunFam Glucose-6-phosphate 1-dehydrogenase 265 570 - -
Smso26g01886 576 PIRSF G6PD 81 573 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 Gene3D Dihydrodipicolinate Reductase; domain 2 265 570 - -
Smso26g01886 576 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 98 276 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 NCBIfam glucose-6-phosphate dehydrogenase 94 570 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Smso26g01886 576 Coils Coil 347 367 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g01886 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr21:12514424 Smso26g01886 Smso-Chr26:36524480 dispersed
Smso Smso-Chr23:11645407 Smso26g01886 Smso-Chr26:36524480 dispersed
Smso Smso-Chr24:54916837 Smso26g01886 Smso-Chr26:36524480 dispersed
Smso Smso-Chr26:36524480 Smso2g00950 Smso-Chr2:14756383 dispersed
Smso Smso-Chr26:36524480 Smso4g01224 Smso-Chr4:16332404 transposed