AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g01961 ATGGAAGAATCACCGGCGACGAACCTCGGCGGCGAGCCTCACCACTACCTAATCACAGCATTCTCAGAGATAACTTCTGCTTCCAAAGAAGAAGCCACCTTCTTCCTCGAATCTCACAACTACGATCTCGATTCCGCCGTCTCCACCTTCTTCGAAACCACCACCGCCACTGCCGGCGATGACGCTCCCGTGTCTGCTCTACCTGGCCGGAACCCTAGCCCTTCGTTTTCTCCGTCGTCCTCCCCGTCTCGTTCCCGATCAGCTTCCCCTCTCCCTTCACTCGGTTTACAACAATCGGCCGGTGAAAATCCGTACAATCTGCGATCTCGGAATACCGGTGCGGATAAGAAGCCGTCAGGTAGTAGGTCTACTGGACGCATTCGGACCTTCGCAGATCTGAATCAACCCGGTGATGACTCAGGGAGTGACTCGGATGAACCTCAGGAGTATTATACCGGTGGTGAAAAGAGTGGCATGCTTGTTCAAGATCCAAGAAAGATGAATGATGTGGAATCTCTGTTTAATCAAGCAAGGCAAGCAGGTGCTGAAGATGGAACTCTTGATCAGTTTCAACCATCTTCTAGTTCTAGAAGCTTCTCTGGAAGAGGAAGACTTTTATCCGGAGAGACGACATCAGCGCCACCTCAGCAATCTGAACCTGAGGTTTTCACACACACCATCACTTTCTGGACCAATGGTTTCACTGTAAATGATGGTCCTTTGAGGAGGCTTGATGATCCCGAAAACGCATCTTTCTTGGAGAGCATAAGGAAGTCTGAGTGTCCGGAAGAACTTAAGCCTGCAACAGGAAGAGCCCCTGTTCATGTTAGTCTTGTGAGGAAGTTGGAGGACTACCCTGTCCAGAAGCACCGCCAGGCTGCCTTTGCGGGGGCGGGTAGAACCCTAGGCACCACCCCTTCTTCAGCGGACACCGCTGCCGCCAGCTCGGCTCCTGCAACCGCTGCTCCAACCCCATTTGAAGGTCTAGTTGTCGACAACACATTACCATCCACCTCTATTCAACTTAGACTGGCCGACGGGACTCGTATGGTTTCACGTTTCAATTTCCACCACACGATAAGTAACATTCGTTCTTTCATTGATGCATCGAGGCCCGGTGGCCCTCGGGCTTATCAGTTGCTGACAATGGGGTTCCCGCCAAAACAGCTTAATGATTTGAACCAGACAATTGAAGAGGCTGGGTTAGCAAATTCGGTTGTGATCCAAAAACTCTAA 1236 51.21 MEESPATNLGGEPHHYLITAFSEITSASKEEATFFLESHNYDLDSAVSTFFETTTATAGDDAPVSALPGRNPSPSFSPSSSPSRSRSASPLPSLGLQQSAGENPYNLRSRNTGADKKPSGSRSTGRIRTFADLNQPGDDSGSDSDEPQEYYTGGEKSGMLVQDPRKMNDVESLFNQARQAGAEDGTLDQFQPSSSSRSFSGRGRLLSGETTSAPPQQSEPEVFTHTITFWTNGFTVNDGPLRRLDDPENASFLESIRKSECPEELKPATGRAPVHVSLVRKLEDYPVQKHRQAAFAGAGRTLGTTPSSADTAAASSAPATAAPTPFEGLVVDNTLPSTSIQLRLADGTRMVSRFNFHHTISNIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLNQTIEEAGLANSVVIQKL 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g01961 411 ProSiteProfiles UBX domain profile. 333 410 IPR001012 GO:0005515(InterPro)
Smso26g01961 411 CDD UBX-UBXN2 339 410 - -
Smso26g01961 411 MobiDBLite consensus disorder prediction 58 160 - -
Smso26g01961 411 Pfam UBX domain 336 410 IPR001012 GO:0005515(InterPro)
Smso26g01961 411 MobiDBLite consensus disorder prediction 301 318 - -
Smso26g01961 411 FunFam Plant UBX domain-containing protein 4 287 411 - -
Smso26g01961 411 SUPERFAMILY UBA-like 16 52 IPR009060 GO:0005515(InterPro)
Smso26g01961 411 Pfam UBA-like domain 17 54 - -
Smso26g01961 411 FunFam Plant UBX domain-containing protein 4 222 284 - -
Smso26g01961 411 Gene3D - 287 411 - -
Smso26g01961 411 MobiDBLite consensus disorder prediction 186 220 - -
Smso26g01961 411 Gene3D SEP domain 222 284 IPR036241 -
Smso26g01961 411 MobiDBLite consensus disorder prediction 296 323 - -
Smso26g01961 411 MobiDBLite consensus disorder prediction 70 141 - -
Smso26g01961 411 ProSiteProfiles SEP domain profile. 222 286 IPR012989 -
Smso26g01961 411 Pfam SEP domain 227 300 IPR012989 -
Smso26g01961 411 Gene3D - 14 53 - -
Smso26g01961 411 PANTHER UBX DOMAIN CONTAINING PROTEIN 14 410 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Smso26g01961 411 SMART faf-3 219 312 IPR012989 -
Smso26g01961 411 MobiDBLite consensus disorder prediction 182 220 - -
Smso26g01961 411 SMART ubx-3 332 411 IPR001012 GO:0005515(InterPro)
Smso26g01961 411 SUPERFAMILY Ubiquitin-like 295 409 IPR029071 -
Smso26g01961 411 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 216 306 IPR036241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g01961 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr23:9411599 Smso26g01961 Smso-Chr26:42547675 dispersed
Smso Smso-Chr26:42547675 Smso2g00814 Smso-Chr2:12077755 dispersed
Smso Smso-Chr13:5324884 Smso26g01961 Smso-Chr26:42547675 wgd