Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso26g01969 | ATGGCTGAAATCCTTAGCCCTAATCGTACACCGGCCCTCAAACTCAGAGCGCCGGTCTTGTCGCCGGACCGAACTTTATTTTTGGGCTCCAACGATGACAAACTTGAGCGTGCTCAGGCACGTGCCGCTCGTGTTGCAGCGAACCGCCGGAAGCCCCTCGCATTTCATCAAGAAACGGATGCTGCTCCCGCCGATCCATGTCTAGGTCAAGAGCAGATCATGGAATTGCTCCAGAATTGCATCAAATTGGCCAGTGAAAATAAAATTAATCAGAAGAATACGTGGGAGCTGAATCTGATAGATCATCTTTGCGACATTATTAAGGTGGAAGAAGAGAATGATGTGGAGACCAATTTCCAGAAGGCAAGTTGTACTCTTGAAGCTGGAGTTCGAATATACTCAATGAGGGTGGATTCAGTACATTCAGAGGCATATAAGGTTCTTGGAGGGATTAGTCGAGTTGCACAGGATGCTGAACAAGATGTTGTAGAGGATGACAGTACAGACAACGCACAAGTAGAGGGCACTACGAAGGAGGAGAAGAAGGAACACAAGTTATCTCCTTTAACAACACTGGAATCATCCTTTGAGGCTCTTAATGTGAAGAAGTTTGATGTTGCGTTTGCTGTTGATCCTCTGTATCATCAAACAACTGCCCAGTTTGATGAAGGTGGATCAAAAGGTCTTTTGCTGAATAACCTGGGAGTTTATGGTGGATGCCGAATGGTTTTTGATTCACTTGAAGTACCTGGGAAGTGCATGTCATGCTCAAGTGACCATGATAAAACAAATACTATCGATATTTCTCATGCTAGAGACTGTATTGAACAAATGGTATCAAATTTTGTAAAGCAACTTGAAATCTCCCCAAGTCTTAAGGACATAGTCAATCTGTTTGATGAAGATAATAAAAGACCAGCAGATACTTTTTCTTCTTCCCAAAAATCTGTAGAACCAGATAATGAAGCTTATGATGACAATGAATTTAATGATGGTGGACATGATAACTCAGAAACCTGGGACTTCATTAATGACAGCCAGACAAATGTGAATGATGAATGCTCCTATGAAGGAGAGGATGATCTTTTTGTTCCAGTTCATCATGAGGAAAACGAGCCGTATGTTTCTCATAATGGTGATGTGGATGATAGATCCACAACAGTTGACAGTTTCCTGTTTCTAAGCCTTGGCTTAACCGGAAAACAAAACGCCTGGGCGGGCCCTGATCACTGGAAGTATCGAAAGACTAAAGGTTTAGAAGATCCTGCTAAGGAAACTGGATCACCAAAAATGCCTAAAAGAAATAAGAAACAAGCTGAACCTGATATAGAATTTACTAAATCCTTAGACTTGGATAAAGAAACGTGTAGTATCTTTGCCCCCCCTAAAAACCCTAAAACTCTATTATTGCCTGCAAATAAAGAACCATGCAACACAACACTTCCGGAGGATTGCCATTATCAACCAGAAGATCTTGTGAAGATATTTCTTCTTCCAAATGTTATGTGCCTTGGGAAGAAAGGAAGGAGGTATTCTGATGAAAGTGGTCAACAAGGAGAAAGTAATAATGAAACCTTTCCATCTTGGGATGATGACTGTGGCCAATTTGATGATGGAAATACTTATAATAGTGATGTTGATGACTCTACCACACTTGTCTCTCAGCCCCGTCAGGTAAATAAGATTGAAGTTGAGTATGACAAAACATCTAAACAAGTTGATGTTCAAGCACTCAAAGAGACTCTTTGGTCATCTATGCAAGAAACACATGAAACTAAGACATTGTCTTTTAAGCACTTGCTGACATCTTTCCCAGCCGATAAAAAGAAACCGGCAGCTGCATCTATTGATAACATCTCCCCTCACTTGTGTTTCATTTGTGTGCTGCATCTGGCTAACGAACACGGTTTGAGCATAATCGGATGTGCTGACTTGGATGACCTCTCAATAAACCTACCGGCATAG | 1965 | 41.53 | MAEILSPNRTPALKLRAPVLSPDRTLFLGSNDDKLERAQARAARVAANRRKPLAFHQETDAAPADPCLGQEQIMELLQNCIKLASENKINQKNTWELNLIDHLCDIIKVEEENDVETNFQKASCTLEAGVRIYSMRVDSVHSEAYKVLGGISRVAQDAEQDVVEDDSTDNAQVEGTTKEEKKEHKLSPLTTLESSFEALNVKKFDVAFAVDPLYHQTTAQFDEGGSKGLLLNNLGVYGGCRMVFDSLEVPGKCMSCSSDHDKTNTIDISHARDCIEQMVSNFVKQLEISPSLKDIVNLFDEDNKRPADTFSSSQKSVEPDNEAYDDNEFNDGGHDNSETWDFINDSQTNVNDECSYEGEDDLFVPVHHEENEPYVSHNGDVDDRSTTVDSFLFLSLGLTGKQNAWAGPDHWKYRKTKGLEDPAKETGSPKMPKRNKKQAEPDIEFTKSLDLDKETCSIFAPPKNPKTLLLPANKEPCNTTLPEDCHYQPEDLVKIFLLPNVMCLGKKGRRYSDESGQQGESNNETFPSWDDDCGQFDDGNTYNSDVDDSTTLVSQPRQVNKIEVEYDKTSKQVDVQALKETLWSSMQETHETKTLSFKHLLTSFPADKKKPAAASIDNISPHLCFICVLHLANEHGLSIIGCADLDDLSINLPA | 654 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso26g01969 | 654 | PANTHER | CONDENSIN COMPLEX SUBUNIT 2 | 26 | 652 | IPR022816 | GO:0000796(InterPro)|GO:0000799(PANTHER)|GO:0003682(PANTHER)|GO:0007076(InterPro)|GO:0007076(PANTHER) | |
| Smso26g01969 | 654 | Pfam | Condensin complex subunit 2 | 538 | 650 | IPR022816 | GO:0000796(InterPro)|GO:0007076(InterPro) | |
| Smso26g01969 | 654 | Pfam | Condensin complex subunit 2 | 28 | 521 | IPR022816 | GO:0000796(InterPro)|GO:0007076(InterPro) | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 159 | 186 | - | - | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 510 | 530 | - | - | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 319 | 335 | - | - | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 417 | 440 | - | - | |
| Smso26g01969 | 654 | PIRSF | Condensin-H | 531 | 654 | IPR022816 | GO:0000796(InterPro)|GO:0007076(InterPro) | |
| Smso26g01969 | 654 | PIRSF | Condensin-H | 5 | 549 | IPR022816 | GO:0000796(InterPro)|GO:0007076(InterPro) | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 515 | 529 | - | - | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 306 | 338 | - | - | |
| Smso26g01969 | 654 | MobiDBLite | consensus disorder prediction | 171 | 186 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso26g01969 | K06676 | condensin complex subunit 2 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr25:17444255 | Smso26g01969 | Smso-Chr26:42611714 | dispersed | |
| Smso | Smso-Chr13:5231490 | Smso26g01969 | Smso-Chr26:42611714 | wgd |