AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g01969 ATGGCTGAAATCCTTAGCCCTAATCGTACACCGGCCCTCAAACTCAGAGCGCCGGTCTTGTCGCCGGACCGAACTTTATTTTTGGGCTCCAACGATGACAAACTTGAGCGTGCTCAGGCACGTGCCGCTCGTGTTGCAGCGAACCGCCGGAAGCCCCTCGCATTTCATCAAGAAACGGATGCTGCTCCCGCCGATCCATGTCTAGGTCAAGAGCAGATCATGGAATTGCTCCAGAATTGCATCAAATTGGCCAGTGAAAATAAAATTAATCAGAAGAATACGTGGGAGCTGAATCTGATAGATCATCTTTGCGACATTATTAAGGTGGAAGAAGAGAATGATGTGGAGACCAATTTCCAGAAGGCAAGTTGTACTCTTGAAGCTGGAGTTCGAATATACTCAATGAGGGTGGATTCAGTACATTCAGAGGCATATAAGGTTCTTGGAGGGATTAGTCGAGTTGCACAGGATGCTGAACAAGATGTTGTAGAGGATGACAGTACAGACAACGCACAAGTAGAGGGCACTACGAAGGAGGAGAAGAAGGAACACAAGTTATCTCCTTTAACAACACTGGAATCATCCTTTGAGGCTCTTAATGTGAAGAAGTTTGATGTTGCGTTTGCTGTTGATCCTCTGTATCATCAAACAACTGCCCAGTTTGATGAAGGTGGATCAAAAGGTCTTTTGCTGAATAACCTGGGAGTTTATGGTGGATGCCGAATGGTTTTTGATTCACTTGAAGTACCTGGGAAGTGCATGTCATGCTCAAGTGACCATGATAAAACAAATACTATCGATATTTCTCATGCTAGAGACTGTATTGAACAAATGGTATCAAATTTTGTAAAGCAACTTGAAATCTCCCCAAGTCTTAAGGACATAGTCAATCTGTTTGATGAAGATAATAAAAGACCAGCAGATACTTTTTCTTCTTCCCAAAAATCTGTAGAACCAGATAATGAAGCTTATGATGACAATGAATTTAATGATGGTGGACATGATAACTCAGAAACCTGGGACTTCATTAATGACAGCCAGACAAATGTGAATGATGAATGCTCCTATGAAGGAGAGGATGATCTTTTTGTTCCAGTTCATCATGAGGAAAACGAGCCGTATGTTTCTCATAATGGTGATGTGGATGATAGATCCACAACAGTTGACAGTTTCCTGTTTCTAAGCCTTGGCTTAACCGGAAAACAAAACGCCTGGGCGGGCCCTGATCACTGGAAGTATCGAAAGACTAAAGGTTTAGAAGATCCTGCTAAGGAAACTGGATCACCAAAAATGCCTAAAAGAAATAAGAAACAAGCTGAACCTGATATAGAATTTACTAAATCCTTAGACTTGGATAAAGAAACGTGTAGTATCTTTGCCCCCCCTAAAAACCCTAAAACTCTATTATTGCCTGCAAATAAAGAACCATGCAACACAACACTTCCGGAGGATTGCCATTATCAACCAGAAGATCTTGTGAAGATATTTCTTCTTCCAAATGTTATGTGCCTTGGGAAGAAAGGAAGGAGGTATTCTGATGAAAGTGGTCAACAAGGAGAAAGTAATAATGAAACCTTTCCATCTTGGGATGATGACTGTGGCCAATTTGATGATGGAAATACTTATAATAGTGATGTTGATGACTCTACCACACTTGTCTCTCAGCCCCGTCAGGTAAATAAGATTGAAGTTGAGTATGACAAAACATCTAAACAAGTTGATGTTCAAGCACTCAAAGAGACTCTTTGGTCATCTATGCAAGAAACACATGAAACTAAGACATTGTCTTTTAAGCACTTGCTGACATCTTTCCCAGCCGATAAAAAGAAACCGGCAGCTGCATCTATTGATAACATCTCCCCTCACTTGTGTTTCATTTGTGTGCTGCATCTGGCTAACGAACACGGTTTGAGCATAATCGGATGTGCTGACTTGGATGACCTCTCAATAAACCTACCGGCATAG 1965 41.53 MAEILSPNRTPALKLRAPVLSPDRTLFLGSNDDKLERAQARAARVAANRRKPLAFHQETDAAPADPCLGQEQIMELLQNCIKLASENKINQKNTWELNLIDHLCDIIKVEEENDVETNFQKASCTLEAGVRIYSMRVDSVHSEAYKVLGGISRVAQDAEQDVVEDDSTDNAQVEGTTKEEKKEHKLSPLTTLESSFEALNVKKFDVAFAVDPLYHQTTAQFDEGGSKGLLLNNLGVYGGCRMVFDSLEVPGKCMSCSSDHDKTNTIDISHARDCIEQMVSNFVKQLEISPSLKDIVNLFDEDNKRPADTFSSSQKSVEPDNEAYDDNEFNDGGHDNSETWDFINDSQTNVNDECSYEGEDDLFVPVHHEENEPYVSHNGDVDDRSTTVDSFLFLSLGLTGKQNAWAGPDHWKYRKTKGLEDPAKETGSPKMPKRNKKQAEPDIEFTKSLDLDKETCSIFAPPKNPKTLLLPANKEPCNTTLPEDCHYQPEDLVKIFLLPNVMCLGKKGRRYSDESGQQGESNNETFPSWDDDCGQFDDGNTYNSDVDDSTTLVSQPRQVNKIEVEYDKTSKQVDVQALKETLWSSMQETHETKTLSFKHLLTSFPADKKKPAAASIDNISPHLCFICVLHLANEHGLSIIGCADLDDLSINLPA 654
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g01969 654 PANTHER CONDENSIN COMPLEX SUBUNIT 2 26 652 IPR022816 GO:0000796(InterPro)|GO:0000799(PANTHER)|GO:0003682(PANTHER)|GO:0007076(InterPro)|GO:0007076(PANTHER)
Smso26g01969 654 Pfam Condensin complex subunit 2 538 650 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Smso26g01969 654 Pfam Condensin complex subunit 2 28 521 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Smso26g01969 654 MobiDBLite consensus disorder prediction 159 186 - -
Smso26g01969 654 MobiDBLite consensus disorder prediction 510 530 - -
Smso26g01969 654 MobiDBLite consensus disorder prediction 319 335 - -
Smso26g01969 654 MobiDBLite consensus disorder prediction 417 440 - -
Smso26g01969 654 PIRSF Condensin-H 531 654 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Smso26g01969 654 PIRSF Condensin-H 5 549 IPR022816 GO:0000796(InterPro)|GO:0007076(InterPro)
Smso26g01969 654 MobiDBLite consensus disorder prediction 515 529 - -
Smso26g01969 654 MobiDBLite consensus disorder prediction 306 338 - -
Smso26g01969 654 MobiDBLite consensus disorder prediction 171 186 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g01969 K06676 condensin complex subunit 2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr25:17444255 Smso26g01969 Smso-Chr26:42611714 dispersed
Smso Smso-Chr13:5231490 Smso26g01969 Smso-Chr26:42611714 wgd