AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso26g01983 | ATGGGTGCTCTGTTCAAATCGAGCTTGCTTTTGTTGTTTCTTTGGTTCCTTCTGTCACCTACTGCATATTCGGGTCCGAATGGGGGATTGGTTAAAGTTGGACTTAAAAAGAGGAAAATCAACCAATTGAACCAAGTTGGTGGACATGCTGGCTCTAGTGCTAGAAGAAATTATGGTGTTCGCGGTAATTTTAGGGATTCAGATAGTGATATGATTGCCCTAAACAATTACATGGATGCTCAGTATTATGGTGAGATTGGTATTGGTACTCCACCTCAAAAGTTCACTGTGATTTTTGACACTGGTAGTTCTAATCTGTGGGTGCCTTCTGCAAAGTGCTACTTCTCAGTCGCTTGCCTTTTTCACTCAAAGTACAAGTCTAGCCACTCAAGTTCCTATGAGAAAAATGGGAAATCTGCTGCAATTCAATATGGAACTGGCTCTATCTCTGGTTTCTTTAGCAAAGATTCTGTCAAACTTGGTGACCTTGTTGTTACAGAGCAGGATTTTATAGAGGCAACTAAAGAGCCTGGTATCACTTTCTTGGCAGCCAAGTTTGATGGTATACTTGGCCTTGGATTTCAAGAAATCTCTGTTGGGGATGCTGTTCCTGTTTGGTACAATATGGTTAAGCAAGGTCTAGTTCAAGAACCTGTATTTTCATTTTGGCTTAATCGCAATACTGACGAGGATGAAGGAGGTGAACTTGTGTTTGGTGGGGTTGATACTAATCATTTCAAGGGTGAACACACATATGTCCCTGTAACTCAAAAAGGCTATTGGCAGTTCGATATGGGTGATGTCCTGATTGGTGGTGAAACAACAGGATTTTGCAACAATGGTTGTGCAGCAATTGCTGATTCTGGAACTTCTTTGTTGGCTGGTCCAACGGCTGTTATTACTCAAATCAATCAAGCCATTGGTGCTGCTGGGGTTATGAGCCAACAATGCAAGACATTGGTCGATCAGTATGGAAAAACTATAATTGAGATGCTACTATCTGAGACACAACCTGAAAAAATCTGTTCTCAAATGAAGTTATGCTCCTTTGATGGTTCTCATGATACCAGCATGATAATTGAGAGTGTGGTTGACAAGAATAATGGAAAATCATCTGGTGCACATGATGAGATGTGTAGTATCTGTGAGATGGCAGTTGTTTGGATGCAAAACCAGATCAAGCGAAATGAGACTGAAGATCAAATAATTAACTATGTTGATCAGCTGTGTGAGAAGTTGCCCAGTCCAATGGGAGAGTCTGGAGTTGACTGCAACAGTCTTTCATCCATGCCTAGTATTGCGTTTACCATTGGTGGTAAAACTTTTGACCTCTCACCCGAACAGTATGTCCTGAAAGTTGGTGAAGGAGCTGCAGCACAATGCATCAGTGGATTTACTGCTCTTGATGTGGCACCTCCTCGTGGGCCCCTATGGATTTTGGGAGATATTTTCATGGGCAAATACCATACGGTGTTCGACTATGGTAAATTGCGAGTTGGGTTTGCAGAAGCTGTTTGA | 1518 | 41.9 | MGALFKSSLLLLFLWFLLSPTAYSGPNGGLVKVGLKKRKINQLNQVGGHAGSSARRNYGVRGNFRDSDSDMIALNNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSAKCYFSVACLFHSKYKSSHSSSYEKNGKSAAIQYGTGSISGFFSKDSVKLGDLVVTEQDFIEATKEPGITFLAAKFDGILGLGFQEISVGDAVPVWYNMVKQGLVQEPVFSFWLNRNTDEDEGGELVFGGVDTNHFKGEHTYVPVTQKGYWQFDMGDVLIGGETTGFCNNGCAAIADSGTSLLAGPTAVITQINQAIGAAGVMSQQCKTLVDQYGKTIIEMLLSETQPEKICSQMKLCSFDGSHDTSMIIESVVDKNNGKSSGAHDEMCSICEMAVVWMQNQIKRNETEDQIINYVDQLCEKLPSPMGESGVDCNSLSSMPSIAFTIGGKTFDLSPEQYVLKVGEGAAAQCISGFTALDVAPPRGPLWILGDIFMGKYHTVFDYGKLRVGFAEAV | 505 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso26g01983 | 505 | SUPERFAMILY | Saposin | 313 | 414 | IPR011001 | - | |
| Smso26g01983 | 505 | FunFam | Lysosomal aspartic protease | 68 | 310 | - | - | |
| Smso26g01983 | 505 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 27 | 504 | IPR001461 | GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(InterPro)|GO:0006508(PANTHER) | |
| Smso26g01983 | 505 | CDD | phytepsin | 72 | 503 | IPR033869 | GO:0004190(InterPro) | |
| Smso26g01983 | 505 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 284 | 295 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Smso26g01983 | 505 | PRINTS | Pepsin (A1) aspartic protease family signature | 284 | 295 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Smso26g01983 | 505 | PRINTS | Pepsin (A1) aspartic protease family signature | 88 | 108 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Smso26g01983 | 505 | PRINTS | Pepsin (A1) aspartic protease family signature | 234 | 247 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Smso26g01983 | 505 | PRINTS | Pepsin (A1) aspartic protease family signature | 478 | 493 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Smso26g01983 | 505 | Pfam | Saposin-like type B, region 2 | 315 | 348 | IPR008138 | - | |
| Smso26g01983 | 505 | Gene3D | Acid Proteases | 31 | 240 | IPR021109 | - | |
| Smso26g01983 | 505 | SUPERFAMILY | Acid proteases | 10 | 504 | IPR021109 | - | |
| Smso26g01983 | 505 | Gene3D | - | 312 | 414 | - | - | |
| Smso26g01983 | 505 | ProSiteProfiles | Peptidase family A1 domain profile. | 82 | 502 | IPR033121 | - | |
| Smso26g01983 | 505 | Gene3D | Acid Proteases | 241 | 504 | IPR021109 | - | |
| Smso26g01983 | 505 | ProSiteProfiles | Saposin B type domain profile. | 312 | 352 | IPR008139 | - | |
| Smso26g01983 | 505 | SMART | sapb-4 | 276 | 348 | IPR008139 | - | |
| Smso26g01983 | 505 | SMART | sapb-4 | 377 | 461 | IPR008139 | - | |
| Smso26g01983 | 505 | FunFam | Vacuolar aspartic proteinase | 393 | 504 | - | - | |
| Smso26g01983 | 505 | Pfam | Saposin-like type B, region 1 | 378 | 414 | IPR007856 | GO:0006629(InterPro) | |
| Smso26g01983 | 505 | Pfam | Eukaryotic aspartyl protease | 81 | 504 | IPR033121 | - | |
| Smso26g01983 | 505 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 97 | 108 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Smso26g01983 | 505 | ProSiteProfiles | Saposin B type domain profile. | 375 | 416 | IPR008139 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso26g01983 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 148125 | Smso18g01473 | Smso26g01983 | |
| 431877 | Smso26g01983 | Smso29g00207 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr18:72507684 | Smso26g01983 | Smso-Chr26:43023497 | dispersed | |
| Smso | Smso-Chr19:82049208 | Smso26g01983 | Smso-Chr26:43023497 | dispersed | |
| Smso | Smso-Chr1:86845616 | Smso26g01983 | Smso-Chr26:43023497 | dispersed | |
| Smso | Smso-Chr1:117242793 | Smso26g01983 | Smso-Chr26:43023497 | dispersed | |
| Smso | Smso-Chr25:17533988 | Smso26g01983 | Smso-Chr26:43023497 | dispersed | |
| Smso | Smso-Chr26:43023497 | Smso29g00207 | Smso-Chr29:3299587 | dispersed | |
| Smso | Smso-Chr26:42988331 | Smso26g01983 | Smso-Chr26:43023497 | tandem | |
| Smso | Smso-Chr18:67500820 | Smso26g01983 | Smso-Chr26:43023497 | transposed | |
| Smso | Smso-Chr7:39246340 | Smso26g01983 | Smso-Chr26:43023497 | transposed | |
| Smso | Smso-Chr26:43023497 | Smso7g00166 | Smso-Chr7:2945442 | wgd |