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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g02017 ATGAAAATAAACATGGTTTACAAGATTCTTCTTCTAACTCTTCTCATTGTAGCCTCACTTGTATCATCATCATTTTCAGCCCGTTGCGGTTCCTCCATTCCAATGGTGAAACTTAGTGCAACCGATCAAAATCAGGAATCTTTATCTTTAGTAGATGATCAAGTGTTAGAGAGGGATGATATAATTCATGAGAGGCTGCTAAGGGCTAATACAAAAGATTATGGACGACCGGATCCTGCACCGACGTATGTCAAGCCTCCGTTTAAGCTCATACCAAACTAG 282 40.07 MKINMVYKILLLTLLIVASLVSSSFSARCGSSIPMVKLSATDQNQESLSLVDDQVLERDDIIHERLLRANTKDYGRPDPAPTYVKPPFKLIPN 93
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g02017 93 PANTHER PROTEIN CASPARIAN STRIP INTEGRITY FACTOR 1-RELATED 1 93 IPR038974 -
Smso26g02017 93 MobiDBLite consensus disorder prediction 72 93 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g02017 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
431886 Smso26g02017 Smso29g00256
431887 Smso26g02017 Smso7g00217
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr13:3828837 Smso26g02017 Smso-Chr26:45265001 wgd
Smso Smso-Chr26:45265001 Smso29g00256 Smso-Chr29:4077520 wgd
Smso Smso-Chr26:45265001 Smso7g00217 Smso-Chr7:3803300 wgd