AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g02021 ATGGCGGCTGCTGCTTCTTCTCACCTTCAGCTCCAATCACTTTCATTCGCCAAAACCCTAAATTCTTCATCCAACCCAATCACCCTCAAATCCCTAATTTCCTTCAAATCCAACTTCAAAACCCTAAATATCCGAGCAGTCATATCCCAAAACCCAATAGAAACCCACAAATTCCAGCATTGTTTCACCAAGAAAGAAGATGGGTATTTGTACTGTGAGGGTCATAAGGTTGAAGAAGTGATGGAGGCGGTTGAAAAAAGGCCATTTTATCTTTACAGTAAGCCTCAGATAACTAGAAATGTTGAGGCTTATAAGGATGCTTTGGAGGGATTGAATTCGATAATTGGATATGCAATTAAAGCCAATAATAATTTCATGATTTTGCAGCATTTGAGGAGTTTGGGTTGTGGGGCTGTTCTGGTTAGTGGGAATGAACTCAGATTGGCACTCAGGGCTGGTTTTGATCCTACTAGGTGTGTTTTTAATGGAAATGGAAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTGTTTGTTAACATAGATAGTGAATTTGATTTGGATAACATTGTATCGGCAGCAAGAATTGCTGGGAAAAAGGTCAATGTATTGCTTCGAATCAATCCGGATGTTGACCCTCAGGTCCATCCTTATGTTGCGACTGGGAACAAGAACTCTAAATTTGGTATAAGAAACGAGAAGTTGCAATGGTTTTTAGATGCAGTGAAGTCATATCCTGATGAACTTAAGCTAGTTGGGGCCCATTGCCATCTTGGATCCACCATTACCAAGGTCGACATTTTCAGAGATGCTGCAGCAATTATGGTGAAATTCATTGACGAAATTCGATCCCAAGGGTTCGATATTAGTTATTTAAACATTGGAGGTGGTCTCGGGATCGACTACTATCACACCGGTACTGTCCTTCCTACACCAAGAGATCTCATCGACACAGTGCGGGAGCTAGTCAAGTCTCGAAATCTCAATTTAATTATTGAACCCGGGAGGTCCCTGATTGCTAATACTTGCTGTTTTGTTAATCGCGTAACTGGTGTAAAAACAAACGGCTCAAAAAACTTTATTGTGATTGATGGAAGCATGGCTGAGCTTATTCGCCCTAGCCTATATGATGCTTATCAACACATAGAACTGGTTTCTCCCCCACTACCTGACTCTGCTGTTTCTACTTTTGATGTTGTGGGCCCGGTTTGCGAGTCGGCTGATTTCTTGGGGAAAAACAGGGAACTTCCTGCACCAGTCAGGGGTTCTGGGCTTGTAGTTCATGATGCAGGTGCCTACTGCATGAGTATGGCATCAACTTACAACCTCAAAATGCGCCCACCTGAGTACTGGGTTGAAGAGGATGGATCAGTAGCCAAAATCAGGCATGGGGAGACTTTTGAAGATCATATGAGATATTTTGAGGGACTCTCAATCTAA 1446 42.46 MAAAASSHLQLQSLSFAKTLNSSSNPITLKSLISFKSNFKTLNIRAVISQNPIETHKFQHCFTKKEDGYLYCEGHKVEEVMEAVEKRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNFMILQHLRSLGCGAVLVSGNELRLALRAGFDPTRCVFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRSQGFDISYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVKSRNLNLIIEPGRSLIANTCCFVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPPLPDSAVSTFDVVGPVCESADFLGKNRELPAPVRGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVAKIRHGETFEDHMRYFEGLSI 481
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g02021 481 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 286 301 IPR022657 -
Smso26g02021 481 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 343 433 IPR022643 GO:0003824(InterPro)
Smso26g02021 481 SUPERFAMILY Alanine racemase C-terminal domain-like 318 474 IPR009006 GO:0003824(InterPro)
Smso26g02021 481 PANTHER DIAMINOPIMELATE DECARBOXYLASE 54 475 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Smso26g02021 481 Gene3D Alanine racemase 94 339 IPR029066 -
Smso26g02021 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 250 263 IPR000183 GO:0003824(InterPro)
Smso26g02021 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 433 446 IPR000183 GO:0003824(InterPro)
Smso26g02021 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 117 135 IPR000183 GO:0003824(InterPro)
Smso26g02021 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 332 351 IPR000183 GO:0003824(InterPro)
Smso26g02021 481 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 137 149 IPR000183 GO:0003824(InterPro)
Smso26g02021 481 FunFam Diaminopimelate decarboxylase 320 473 - -
Smso26g02021 481 CDD PLPDE-III-DapDC 88 454 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 117 135 IPR022653 -
Smso26g02021 481 PRINTS Diaminopimelate decarboxylase signature 135 152 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 PRINTS Diaminopimelate decarboxylase signature 443 465 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 PRINTS Diaminopimelate decarboxylase signature 360 378 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 PRINTS Diaminopimelate decarboxylase signature 223 232 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 NCBIfam diaminopimelate decarboxylase 63 474 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 96 342 IPR022644 GO:0003824(InterPro)
Smso26g02021 481 SUPERFAMILY PLP-binding barrel 87 343 IPR029066 -
Smso26g02021 481 Hamap Diaminopimelate decarboxylase [lysA]. 74 477 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Smso26g02021 481 FunFam Diaminopimelate decarboxylase 94 339 - -
Smso26g02021 481 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 78 473 IPR009006 GO:0003824(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g02021 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr23:24618571 Smso26g02021 Smso-Chr26:45443110 dispersed
Smso Smso-Chr13:3658925 Smso26g02021 Smso-Chr26:45443110 wgd