AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g02078 ATGGAAAATGCTACAGTAACGTCGTCACAAACTCTTATTTTCACCATCTCTAAATTCTGTCCCCTTCATCCAATCAATTTCGCCTCGTGGCTTGTTACAATTCAGATTCATCACAGTCTCTCAATGCATGACGTTTTCAATCAAGCGTTAGGGTTTTATATCAATGGAGACGTTGCAGGATCTGATCAAAGAGGCAAAGCTTCGCACAACGTGGTGGGCGGTTTGTATCTTCGTCGTTGCCTGCTTCTTAACCCAAAAGTGGAATTTCATTGGAAGATTAGGAAACCTAGACCATCATACTTATCGCATTTAGCGAAAAAACAGTTATCTGTGAATGATTCTCGTCTAACCACATTGCCTCCCCCGCCTAAATGGAAGAAAAAGATTGATTCTCCGGTTGTTGAGGCTGCCATGGATGATTTTGTTAACAAGCTTTTGCAGGAATTTGTGGTTGATTTGGATGTAGTTGATTTAGTAGGGGATCACTTAGAGCTTTTTAGGAAAAACCAAGCGGCAATTGGGAGGGAGGTTATGGTGACACTATCTTCTGAAGAACGAGATGAAAGATTAAAACACCATCTAATGGCTTCTAAAGAGCTCCATCCAGCTTTAATATCTTCAGAGAATGAACCGTGGAACCCACCATCCTCTGCTTGGGCCCGGGTTCTTGAGGCTGCAACCCAAAGAAGAACAGAAGTTCTGCATCCTGAAAATCTTGAAAATATGTGGACCAGAGGAAGAAACTATAAAAAGAAAACTCACAAGAAAGTAGAATGCTCCGGAATAAATGAAAATTTTAATGATCAAACACGAGAGCATAATCTTGATGAAGTTTTGTGTGATCAGAGCAAGACCTCTGATCCTTCTGATTTAATTGAGGAAAATAATTCTAATGTTCTTGGAAGTAAATCTAATTTGGAAAGTTCAAATAGTGTTTCTGACTTGAACATTCAAAATCAAGTTGGTGGATTGATAATTTCAGAATTTTATAGTGCGAATGCTGGTGGAGATAATGATGTAGATGATATTCATAGTGGTTCTGATAAAGTAACATGGACCGAAGGATATGTTCTAAAGCTTAGGTGTCGGGATCTTTTGTCTATAACCAATATTGTTGAGCAACATGAAGTATGGGACTTCTTGAGCATGTCTTCAAAGAGTTACTCTTTCGGAAGGTCATCATCGGTTGTGCAATCCTTAGCAGTCAATGTGGACGATGCTGTAGTTGATATTGCACGCCAATTCAAAGGGGTTTCAGGTAGTTTAATGAAAAAAGTTGTGGGCCCGTGTTCCCCATCTGAATCTGAATCTTCAGTTGCTAACAGAAACGTGCCATTGAAAACTGATTCTGTTACGAAGCAAACTACCTCGGATTTGGGTAACAGTTTTTCTGACAATGAGGAATGTGAAAAAGATAGATTACTTCACCATGAGGAAAAAGTGGGGCCTGCTACACAAGCTAACAATCAGATTTTAGAAAAAAGTGAGGAACAGAATAAAAATAGTTCAGAGGTTCAATCTGAAATACCCAGTCTTGCTGCAAATCTTCCTTCAACTTCTGGTCTTAAGGAAGATCCACTTGGTGTGCCTGCAGAGTGGAGCCCACCAAATTCTGCTGTGTGTTTGAAGCAACTTGGGTATGGTTTACTTGAACTTACACTCTTAACAGTTTTCCCAGAGCTGCAAAGCATCATGCTAAATGTTCATGAAAAGAAAAAAGAGCAGCTAACTTCAAATTTCAAAGTTTATAATTCACAAAGGAAAAACAAAGAGATGGTTGAGAAATTGGAAATATGCATCAACATTTTGAAGATGGGATTTGAGTTTGTGATGGTGTTCTTTGGAGACTTGAAGTTTGCAATTCATCAAAGTAACCAACAAAGCATGTCTTGCACTTCTCAAACCCCCTACATTGGTCTTCTTCCTTGA 1929 39.14 MENATVTSSQTLIFTISKFCPLHPINFASWLVTIQIHHSLSMHDVFNQALGFYINGDVAGSDQRGKASHNVVGGLYLRRCLLLNPKVEFHWKIRKPRPSYLSHLAKKQLSVNDSRLTTLPPPPKWKKKIDSPVVEAAMDDFVNKLLQEFVVDLDVVDLVGDHLELFRKNQAAIGREVMVTLSSEERDERLKHHLMASKELHPALISSENEPWNPPSSAWARVLEAATQRRTEVLHPENLENMWTRGRNYKKKTHKKVECSGINENFNDQTREHNLDEVLCDQSKTSDPSDLIEENNSNVLGSKSNLESSNSVSDLNIQNQVGGLIISEFYSANAGGDNDVDDIHSGSDKVTWTEGYVLKLRCRDLLSITNIVEQHEVWDFLSMSSKSYSFGRSSSVVQSLAVNVDDAVVDIARQFKGVSGSLMKKVVGPCSPSESESSVANRNVPLKTDSVTKQTTSDLGNSFSDNEECEKDRLLHHEEKVGPATQANNQILEKSEEQNKNSSEVQSEIPSLAANLPSTSGLKEDPLGVPAEWSPPNSAVCLKQLGYGLLELTLLTVFPELQSIMLNVHEKKKEQLTSNFKVYNSQRKNKEMVEKLEICINILKMGFEFVMVFFGDLKFAIHQSNQQSMSCTSQTPYIGLLP 642
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g02078 642 PANTHER PX SERINE-THREONINE KINASE PXK 227 363 IPR051837 -
Smso26g02078 642 MobiDBLite consensus disorder prediction 431 463 - -
Smso26g02078 642 MobiDBLite consensus disorder prediction 429 470 - -
Smso26g02078 642 MobiDBLite consensus disorder prediction 282 310 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g02078 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
143060 Smso10g03428 Smso26g02078
147036 Smso16g01529 Smso26g02078
431914 Smso26g02078 Smso29g00275
431915 Smso26g02078 Smso7g00241
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr10:89713922 Smso26g02078 Smso-Chr26:47805106 wgd
Smso Smso-Chr13:2545218 Smso26g02078 Smso-Chr26:47805106 wgd
Smso Smso-Chr16:76000247 Smso26g02078 Smso-Chr26:47805106 wgd
Smso Smso-Chr26:47805106 Smso29g00275 Smso-Chr29:4506460 wgd
Smso Smso-Chr26:47805106 Smso7g00241 Smso-Chr7:4254742 wgd