AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g02081 ATGGAGGAGACACAACTCTCGCCGGCGGTCAGCACCAATCCTACTCCCTACACCACCGCACCTTCCAGCCCTCACCGCTTTCCCAACTTCTTCTACAGCGCGCCCACCAGCCCCATCCACGCCCTCGTCGGCTTCCAACAACACCACCACAACAACGATTTTGCATTCGATTTCACCCAACCCCCTTCTCTCTCCGCCGCCGACGAACTCTTTCACGCCGGTCAAATCAAACCATTGAAGCCTCCTGTCTCCGATCATCCCCCTAAATCCCCCACGTTTTCTCCAAAATGTAAGAAGAAAAACTTTGATCCTTTCACTCAGGCATTAAACCAAACACCTGGTGATCAAGCTCAAAATCCTCCCAAACGAGGGAGGGAAACAACCATCAACACCGCGAGAACTAGAGATAAAGTATCGCGATCCTCGTCTCCGTTCAGAATCTCCGATATTTTATCCGACGAAGATAACAATCAGAAAAATTCTCTAACTTGGTACCCTCGAGATAATTACGATAAATCCTGA 522 49.62 MEETQLSPAVSTNPTPYTTAPSSPHRFPNFFYSAPTSPIHALVGFQQHHHNNDFAFDFTQPPSLSAADELFHAGQIKPLKPPVSDHPPKSPTFSPKCKKKNFDPFTQALNQTPGDQAQNPPKRGRETTINTARTRDKVSRSSSPFRISDILSDEDNNQKNSLTWYPRDNYDKS 173
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g02081 173 Pfam Protein of unknown function (DUF1645) 67 160 IPR012442 -
Smso26g02081 173 MobiDBLite consensus disorder prediction 134 167 - -
Smso26g02081 173 PANTHER OS07G0619500 PROTEIN 19 166 - -
Smso26g02081 173 MobiDBLite consensus disorder prediction 104 127 - -
Smso26g02081 173 MobiDBLite consensus disorder prediction 1 22 - -
Smso26g02081 173 MobiDBLite consensus disorder prediction 66 173 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g02081 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
147027 Smso16g01519 Smso26g02081
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr10:89785390 Smso26g02081 Smso-Chr26:47911174 wgd
Smso Smso-Chr13:2439426 Smso26g02081 Smso-Chr26:47911174 wgd
Smso Smso-Chr16:75908215 Smso26g02081 Smso-Chr26:47911174 wgd
Smso Smso-Chr24:15877924 Smso26g02081 Smso-Chr26:47911174 wgd
Smso Smso-Chr26:47911174 Smso29g00287 Smso-Chr29:4685648 wgd