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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso26g02834 ATGGCTCTTTTGGAATCGAACAAGAACAGAGGGGAGGTTAGAATTCATGAAAGTTTGGAAGAACTCAGCACAGATTTGGCTGATTACATAGCAGAATTATCCGAGACATCGGTTAAAGAACGCGGTTTCTTTGCCATTGCTTTATCTGGTGGTTCCATTACCTTGATGAGGAATCTGTGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCCAAATGGTATATATTTTGGGCCGATGAACGCGTGGTTGCCAAGAGTCATGTTGATAGCAACTATAAGCTTGCTAAGGATCATCTTTTGTCTAAGTTGCCTATTATTCCAAGTCATGTACATTCCATCAATGATTCTCTCACTGCAGAAGAAGCTGCAAACGAGTACGAGTTTGTGATCAGACAACTGGTCAGGACCCGTGTGGTCAACGTGTCTGACGTCAGCGACTGCCCGAAGTTTGACCTAATCCTTCTCGGGATGGGACCGGATGGCCACGTGGCGTCTTTGATCCCTGACCATCCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTCATCACCACTTGCCCTAAGCCACCACCCGAAAGAATCACCTTCACCCTGCCTGTTATCAACTCTGCTGCCAATGTGGCGGTGGTGGCGACAGGTGGCGGGAAAGCGGAAGCTGCCCGGCTGGCTATAGATGATGTGGGACCCGAATGCCCGGTGTTGCCAGCTAGGATGATTGAACCAATTGTAGGAAAACTGGTGTGGTTTTTGGATAACCAGGCTGCTTCAAAGCTCAAGGGCTTTTCTCAATTTGTTGATTATCAAATGTTTTGA 813 46.74 MALLESNKNRGEVRIHESLEELSTDLADYIAELSETSVKERGFFAIALSGGSITLMRNLCGAPYNKTVDWSKWYIFWADERVVAKSHVDSNYKLAKDHLLSKLPIIPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLIPDHPVLEEKNEWVTFITTCPKPPPERITFTLPVINSAANVAVVATGGGKAEAARLAIDDVGPECPVLPARMIEPIVGKLVWFLDNQAASKLKGFSQFVDYQMF 270
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso26g02834 270 CDD 6PGL 20 250 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Smso26g02834 270 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 259 IPR037171 -
Smso26g02834 270 FunFam Probable 6-phosphogluconolactonase 8 259 - -
Smso26g02834 270 Gene3D - 8 261 - -
Smso26g02834 270 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 259 IPR039104 -
Smso26g02834 270 NCBIfam 6-phosphogluconolactonase 15 258 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Smso26g02834 270 Coils Coil 19 39 - -
Smso26g02834 270 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 248 IPR006148 GO:0005975(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso26g02834 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
152977 Smso26g02834 Smso4g00456
339971 Smso26g02834 Smso5g02204
430011 Smso21g00488 Smso26g02834
432070 Smso26g02834 Smso4g00456
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4959258 Smso Smso17g01067 Smso-Chr17:12051799 Smso26g02834 Smso-Chr26:63047449
4982562 Smso Smso26g02834 Smso-Chr26:63047449 Smso8g03045 Smso-Chr8:96284316
5080157 Smso Smso21g00488 Smso-Chr21:4977580 Smso26g02834 Smso-Chr26:63047449
5092217 Smso Smso26g02834 Smso-Chr26:63047449 Smso4g00456 Smso-Chr4:5995550
5092805 Smso Smso26g02834 Smso-Chr26:63047449 Smso5g02204 Smso-Chr5:110006728