AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso28g00384 | ATGGATGGTTTGCTTAAGGTTCATCAACGGGTCGTTGATGATGACAAGGATTCTACTTATGGCCCGCCTGGTGGGCCTGCAACTATTACCACAAGGCTACTGGTGGCAGGTGCACAAGGTGGAAGCTTGATAGGGAAGCAAGGTGCCACCATAAAGACCATTCAAGATTCTTCAAATTGTAAAATCCGTGTTATGGAAGAAAACCTACCAATTTTTGCTCTACCTGATGATAGTGTTGTTGAGATACATGGGGACCCTACAGTGTTATTGGTACATTTGAGATGCAAATGCAAATGCCAAGTTCCCGTCCAAATCAGGAGATGGCCCCTACCCAACCTTGGGGAGCACCATCTCCTCAAGGTTTCCCAGGTGGTGGCCCCGGCTTTGGACCCAATCATTTTATGCCACCTCAGCACCAATTTGACAACTACTATCCAAGGGTCTTCACCATTGGATCAACAGCCTCGTCAGGGCCCACCTTCTTATGGTAGGGCTCCATCTACAGGAACACCTCACACTCCAAGTGTGCAGTCACAGCAGTCAACCGTCGCTAAGGTCTCACAGAACATGCAAATCCCTCTTTCATATGCTGATGCTGTAATCGGTACAGCGGGCACTAATATTAGTTATATCAGGCGGGCCAGTGGCGCAACCATTGCAATACAAGAAACAAGGGGCGTTCCTGATGAAATGACTGTTGAGATTAACGGGTCAGCTTCACAAGTTCAGACTGCTCAACAGTTGATACAGAACTTTGTTGCTGAAGCTGCAACTGCAGCTCAGAATTCAACTGCTCCGCCACCCGCCCAAGGAGGCTATAACCCCTACCCTGGTCATGCTCCTGATTACCCATCTCAACCACCTCCTGCCGCCCATGGACCGCCTGCTGCCGAGTATGGTGGACCTGTGTACGGAGGGAATTATGGATATTAA | 933 | 49.2 | MDGLLKVHQRVVDDDKDSTYGPPGGPATITTRLLVAGAQGGSLIGKQGATIKTIQDSSNCKIRVMEENLPIFALPDDSVVEIHGDPTVLLVHLRCKCKCQVPVQIRRWPLPNLGEHHLLKVSQVVAPALDPIILCHLSTNLTTTIQGSSPLDQQPRQGPPSYGRAPSTGTPHTPSVQSQQSTVAKVSQNMQIPLSYADAVIGTAGTNISYIRRASGATIAIQETRGVPDEMTVEINGSASQVQTAQQLIQNFVAEAATAAQNSTAPPPAQGGYNPYPGHAPDYPSQPPPAAHGPPAAEYGGPVYGGNYGY | 310 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso28g00384 | 310 | ProSiteProfiles | Type-1 KH domain profile. | 185 | 249 | - | - | |
| Smso28g00384 | 310 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 23 | 86 | IPR036612 | GO:0003723(InterPro) | |
| Smso28g00384 | 310 | Gene3D | - | 2 | 91 | - | - | |
| Smso28g00384 | 310 | MobiDBLite | consensus disorder prediction | 145 | 184 | - | - | |
| Smso28g00384 | 310 | MobiDBLite | consensus disorder prediction | 270 | 295 | - | - | |
| Smso28g00384 | 310 | Gene3D | K Homology domain, type 1 | 173 | 261 | IPR036612 | GO:0003723(InterPro) | |
| Smso28g00384 | 310 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 176 | 257 | IPR036612 | GO:0003723(InterPro) | |
| Smso28g00384 | 310 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 1 | 258 | - | GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER) | |
| Smso28g00384 | 310 | SMART | kh-6 | 184 | 254 | IPR004087 | GO:0003676(InterPro) | |
| Smso28g00384 | 310 | SMART | kh-6 | 27 | 101 | IPR004087 | GO:0003676(InterPro) | |
| Smso28g00384 | 310 | ProSiteProfiles | Type-1 KH domain profile. | 28 | 86 | - | - | |
| Smso28g00384 | 310 | Pfam | KH domain | 188 | 250 | IPR004088 | GO:0003723(InterPro) | |
| Smso28g00384 | 310 | Pfam | KH domain | 30 | 86 | IPR004088 | GO:0003723(InterPro) | |
| Smso28g00384 | 310 | CDD | KH-I-PEPPER-like-rpt3 | 185 | 253 | - | - | |
| Smso28g00384 | 310 | MobiDBLite | consensus disorder prediction | 259 | 305 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso28g00384 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 149673 | Smso20g01645 | Smso28g00384 | |
| 153300 | Smso28g00384 | Smso4g02539 | |
| 338039 | Smso28g00384 | Smso1g03770 | |
| 357448 | Smso1g03770 | Smso28g00384 | |
| 429138 | Smso1g03770 | Smso28g00384 | |
| 429663 | Smso20g01645 | Smso28g00384 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr28:9922377 | Smso7g01884 | Smso-Chr7:104308610 | dispersed | |
| Smso | Smso-Chr1:125167966 | Smso28g00384 | Smso-Chr28:9922377 | wgd | |
| Smso | Smso-Chr20:54971514 | Smso28g00384 | Smso-Chr28:9922377 | wgd | |
| Smso | Smso-Chr28:9922377 | Smso29g01447 | Smso-Chr29:39906741 | wgd | |
| Smso | Smso-Chr28:9922377 | Smso4g02539 | Smso-Chr4:49078068 | wgd |