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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00392 ATGTTGGCTCGATTGGCATCCAAACGACTGCTCGAGATCCGTCAAGCCTTCCGTCAATCTCCTCAGTCATCTCGATCGTTATCCACTGCCCTAAACTATCATCTTGATTCTCCCGATAATAACCCTGATCTTCCATGGGAATTTAGCGAGGCTAACAAACCTAAGGTAAAGGAGATATTGTCTCATTACCCATCAAATTACAAGCAATCAGCAGTCATTCCTTTGCTGGATCTTGCACAACAGCAGCATGGGGGGTGGCTTCCTGTTTCAGCAATGAATGCGGTGGCTAAAGTGATAGAAGTTGCTCCTATTCGTGTGTACGAGGTTGCAACATTTTATTCAATGTTCAACAGATCAAAAGTTGGCAAATACCATCTTTTGGTCTGTGGAACAACTCCTTGTATGATCCGTGGGTCACGAGATATTGAAGATGCATTATTGAAGCATTTGGGAGTTAAACGAAATGAGGTTACAAAAGATGGCTTATTTTCTGTTGGAGAAATGGAATGCATGGGTTGTTGTGTAAATGCTCCTATGATTACTGTGGCAGATTATTCAAATGGATCCGAAGGATATACATATAACTACTTTGAAGATGTAACACCAAAGAGAGTTGTAGAGATAGTCGAGGCTTTAAGACGTGGAGAGAAGCCACCGCGCGGCACACAGAACCCACAGCGGATCAATTGTGGTCCCGCAGGCGGAAATACTACATTGCTGGGTGAACCCAAACCGCCACCATGCCGTGACCTAGATGCCTGCTGA 765 44.44 MLARLASKRLLEIRQAFRQSPQSSRSLSTALNYHLDSPDNNPDLPWEFSEANKPKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMIRGSRDIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNGSEGYTYNYFEDVTPKRVVEIVEALRRGEKPPRGTQNPQRINCGPAGGNTTLLGEPKPPPCRDLDAC 254
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00392 254 FunFam NADH-quinone oxidoreductase subunit E 46 120 - -
Smso28g00392 254 PANTHER NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL 25 254 - GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0045272(PANTHER)
Smso28g00392 254 Pfam Thioredoxin-like [2Fe-2S] ferredoxin 56 212 - -
Smso28g00392 254 FunFam NADH dehydrogenase [ubiquinone] flavoprotein 2 121 230 - -
Smso28g00392 254 CDD TRX-Fd-NuoE 123 212 IPR042128 -
Smso28g00392 254 Gene3D - 46 119 IPR041921 -
Smso28g00392 254 ProSitePatterns Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 160 178 IPR002023 GO:0016491(InterPro)
Smso28g00392 254 Gene3D Glutaredoxin 121 230 - -
Smso28g00392 254 SUPERFAMILY Thioredoxin-like 48 224 IPR036249 -
Smso28g00392 254 MobiDBLite consensus disorder prediction 214 254 - -
Smso28g00392 254 NCBIfam NADH-quinone oxidoreductase subunit NuoE 56 185 IPR002023 GO:0016491(InterPro)
Smso28g00392 254 PIRSF NDH-1-E 32 253 IPR002023 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00392 K03943 NADH dehydrogenase (ubiquinone) flavoprotein 2 [EC:7.1.1.2]
Smso28g00392 K00334 NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
153302 Smso28g00392 Smso4g02517
338034 Smso28g00392 Smso1g03758
357453 Smso1g03758 Smso28g00392
429128 Smso1g03758 Smso28g00392
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr21:36182066 Smso28g00392 Smso-Chr28:10179970 dispersed
Smso Smso-Chr1:124843033 Smso28g00392 Smso-Chr28:10179970 wgd
Smso Smso-Chr28:10179970 Smso4g02517 Smso-Chr4:46902519 wgd