AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00393 ATGTCCATGTCCATTGCCCCCAAATCAGCTTCATTTCTCCACCTGCAACACACCAAACCACACTCCCTATTTCGTCTCGATTCTCCAAACTTCCTTCCGTTTCCTCTCAAATCATCCTTCAATCCTCCAATGACAACTCTCTCCGTCGCTTCATCCACTCTCGGACTCTCCGAAACCTTCTCCAAGCTCAAACAAGACGGCAAAGTAGCATTCATACCATATATAACAGCTGGTGACCCTGATTTATCAACAACAGCAGAAGCATTGAAGGTGCTCGACACATGTGGATCAGATATAATTGAATTGGGTGTTCCATATTCTGATCCGTTGGCTGATGGACCAGTCATCCAGGCTGCAGCCACACGTGCATTGGCAAGAGGGACAAATCTCGACTCAATTCTTAATATGTTGAGTGAGGTGATACCACAGTTATCATGTCCAATTGCTTTGTTCACTTACTACAACCCAATTCTTAAGCGTGGAGTGGAGAAGTTCATGATTACTGTGAAAGAAGTTGGAGTACATGGACTTGTGGTGCCAGATGTTCCTCTGGAGGAAACTGAGCTCTTAAGACGGGAAGCTTCCAAGCATAACATCGAGTTGGTACTATTAACAACGCCCACTACTCCAAGAGAACGAATGAAAGCAATCGCTGAAGCTACAGAAGGGTTTCTGTACCTTGTGAGTGCTGTTGGAGTGACGGGAGCTCGTACTTCAGTAAGCGGAAAAGTTCAATCTCTCCTGCAGGAAATCAAAGCGGAAACAAGTAAGCCTGTGGCTGTTGGCTTTGGCATTTCAAAACCTGAGCATGTGAAACAGGTTGTGGGATGGGGAGCTGATGGGGTGATTGTGGGCAGTGCTGTGGTCAAAATATTAGGTGAAGCAGGGTCCCCTGAGGAAGGCCTTAAAGAAGTAGAAGAATTCACAAAATCTTTAAGATCTGCATTGATTTGA 954 45.49 MSMSIAPKSASFLHLQHTKPHSLFRLDSPNFLPFPLKSSFNPPMTTLSVASSTLGLSETFSKLKQDGKVAFIPYITAGDPDLSTTAEALKVLDTCGSDIIELGVPYSDPLADGPVIQAAATRALARGTNLDSILNMLSEVIPQLSCPIALFTYYNPILKRGVEKFMITVKEVGVHGLVVPDVPLEETELLRREASKHNIELVLLTTPTTPRERMKAIAEATEGFLYLVSAVGVTGARTSVSGKVQSLLQEIKAETSKPVAVGFGISKPEHVKQVVGWGADGVIVGSAVVKILGEAGSPEEGLKEVEEFTKSLRSALI 317
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00393 317 SUPERFAMILY Ribulose-phoshate binding barrel 56 297 IPR011060 -
Smso28g00393 317 CDD Tryptophan-synthase-alpha 70 313 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Smso28g00393 317 ProSitePatterns Tryptophan synthase alpha chain signature. 100 113 IPR018204 GO:0004834(InterPro)
Smso28g00393 317 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 51 316 IPR002028 GO:0000162(PANTHER)|GO:0004834(PANTHER)|GO:0004834(InterPro)|GO:0005829(PANTHER)|GO:0006568(InterPro)|GO:0009507(PANTHER)
Smso28g00393 317 Pfam Tryptophan synthase alpha chain 60 314 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Smso28g00393 317 NCBIfam tryptophan synthase subunit alpha 60 313 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Smso28g00393 317 FunFam Tryptophan synthase alpha chain, chloroplastic 54 317 - -
Smso28g00393 317 Gene3D Aldolase class I 55 317 IPR013785 -
Smso28g00393 317 Hamap Tryptophan synthase alpha chain [trpA]. 66 315 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00393 K01695 tryptophan synthase alpha chain [EC:4.2.1.20]
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Event-related genes

Select Gene_1 Gene_2 Event_name
338033 Smso28g00393 Smso1g03757
357454 Smso1g03757 Smso28g00393
429127 Smso1g03757 Smso28g00393
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:124804575 Smso28g00393 Smso-Chr28:10193347 wgd