AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00407 ATGCCCATTTTATCATCTAATCCCATGGTTGGATCACAGCCCTCTGCTTTCAGGCCAAAATCAGTTCCTGCTATGCTAAATACATCTCCATTTTCTTCTCCTGGGCCAATGCCTGGATCTGGGGCTCCTGGTTTTAGACCCATGCAACCAGGTAGACCCGCTCCTTCATATGGCCCGCCAACTACAGGACCTCTCCAGCGTTTACCAGCTCCACAGTTTCCCTTAACATCTCAACCACCCCTGTCACAAACTTCCAATGTGGGCCAGCCCATATTACTTCCGCCAATGAGACCACCTCCTCCCAGCCATGTTCCACCTGTACCAATGGGATCTCCACCTCAAAGCTTGTACAGTGTTTCTTCTAGCAATAATCCTCCAAGGTCTGTTGTAGATTCACCATATTCTGCTTCCAGGCCAAACATCCAACCACCACCATCCTCAACCAGACCGTCTTACCCTGGCTATCCAGGTATACAAAGTAGCCCGGCAAGTCCACCACCACCACCATCAGTTTATCATCAAGGAGGTTATGTCCCACCTCAGCCCACCATACCTGCTCCTTTTTCTTCTCATCAAGGTGGTTATGGACAAGTTCCACCAGTTGCACCGTCATCAGGAATGTATGTAGGTGGCTCAGCACCACCTACTGGAGCTATGCCAGGTTTGGTAGAAGATTTCAGCTCACTTTCTCTAGGATCTGCTCCTGGATCGTTTGATGGTGGGATTGATGCTAAAGCATTACCAAGCCCACTGGATGGTGATGTAGAACCAAGTTTTTTTGCTGGGATGTATCCCATGAATTGTGATTCTAGATATCTAAGACTTACGACTAGTGCTATACCAAATTCACAGTCTTTGGTTTCCAGATGGCAGTTGCCTCTTGGAGCAGTTGTTTGTCCACTGGCAGAACCTCCTGAGGGGGAGGAAGTACCAATAGTTAATTTTGCCACAATGGGTATTGTTCGTTGTAGAAGATGTCGGACGTATGTGAATCCATATGTGACTTTTACAGATGGTGGAAGAAAGTGGAGGTGCAATATATGTTCTTTACTTAATGATGTGCAAAGTGATTATTTCGCTCATTTGGATGCCACTGGGAAAAGAGTCGATCTTGATCAACACCCCGAGCTTACAAAAGGTTCCGTGGAGTTTGTTGCTCCAGCTGAGTACATGGTTCGGCCTCCAATGCCACCATCATACTTTTTTATGATTGATGTATCAATATCTGCAGTTAAAAGTGGAATGCTCGAGGTGATGGCACAAACTATTAAATCTTGTTTGGATAGATTGCCGGGCAGCTCCAGAACACAAATTGGGTTCATAACTTTTGACAGCACAATTCACTTTTACAATATGAAGTCATCTTTGACACAGCCTCAAATGATGGTCGTATCAGATTTGGATGATATTTTTGTTCCATTGCCAGATGATCTCCTTGTCAACCTGTCAGAATCCAGACCTGTGGTGGAGGCATTCCTGGATAGTTTGCCGTCTATGTTTCAGGACAACATTAATGTGGAATCTGCTTTTGGGCCCGCCCTCAAAGCAGATTTTATGGTTATGAGCCAACTTGGAGGGAAATTATTAATTTGTCAGAGCACTCTTCCCTCACTTGGTGTTGGTCGTTTGAAGTTGCGTGGAGATGATCTTCGTGTTTATGGAACAGATAAAGAGCATGCTTTAAGAATACCAGAAGACCCATTTTATAAACAGATGGCTGCTGATTTCACCAAATTCCAAGTTGCTGTGAATTTATATGCGTTTAGTGACAAGTATACTGATATAGCCTCATTAGGTACTTTAGCAAAATACACTGGTGGCCAGGTATATTATTATCCAAGCTTTCATTCTGCCATTCACAAAGACAAGTTGAGACATGAGTTGGCTAGAGATCTCACTAGAGAAACTGCTTGGGAAGCTGTAATGCGCATCAGATGTGGGAAAGGAGTGCGCTTCACCTCGTATCATGGGAATTTTATGCTAAGATCCACAGATCTAATAGCACTTCCAGCCGTCGACTGTGATAAAGCTTATGCAATGCAGTTTGCTCTTGAAGAGACGTTGCTTACAACTCAGATTGTGTATTTCCAAGTGGCGTTACTATACACTGCATCTTGTGGTGAAAGGCGTATTAGAGTACACACTGCTGCAGCATCAGTGGTTGCAGAGTTAGGAGAGATGTACCGCCAGGCAGATACCGGTGCTGTTGTTTCATTGCTTGGTAGATTAGCAATCGAGAAATCTTTATCATATAAATTGGAAGAGGCTCGGAACGCAGTTCAACTAAAAATCGTGAAAGCCCTCAAAGAATATCGAGAACTCTATTCAGTGCATCATCGTGTAGGAAGCAGGATGATCTACCCAGAATCACTCAAATATTTGCCCTTATATGGACTATCACTATGTAAATCAACAGCACTTCGTGGTGGTTATGCTGATGCACAGCTTGATGAACGATGTGCAGCAGGCTTCACCATGATGGCTTTACCTGTTAAAAAAATGTTAAAGCTCTTATATCCTAGCTTGTTAAGAGTAGATGAGTATCTTGTCAAGACACCTACCGTGGATGATGATTTTGCCAGAATTTGTAAAAGGCTGCCACTTGTTGCAGAGAGCTTAGATTCTAGAGGAATATATATATTTGATGACGGTTTTCGTTTTGTTGTGTGGTTTGGCCGCATGCTTTCACCAGATTTAGCCAGGAATCTAGTTGAGGAAGATTCGGCTACAGATTTCTCAAGGAATCAGGTTTGTTTGACCGAACGTAACAATGAAATGTCAAGAAAGCTGATGGGGATACTAAAGAAGCTTAGAGAGGCTGATAAATCATATTATCAATTATGTCATCTTGTGAGACAAGGCGAACAACCGCGGGAAGGTTTCTTTCTACTCTTGAATTTAGTTGAGGACCAGGTTGGTGGTATGAGCGGTTATGCTGATTGGATGCTTCAGATACATCGACAAGTACAGCAATAA 2976 43.51 MPILSSNPMVGSQPSAFRPKSVPAMLNTSPFSSPGPMPGSGAPGFRPMQPGRPAPSYGPPTTGPLQRLPAPQFPLTSQPPLSQTSNVGQPILLPPMRPPPPSHVPPVPMGSPPQSLYSVSSSNNPPRSVVDSPYSASRPNIQPPPSSTRPSYPGYPGIQSSPASPPPPPSVYHQGGYVPPQPTIPAPFSSHQGGYGQVPPVAPSSGMYVGGSAPPTGAMPGLVEDFSSLSLGSAPGSFDGGIDAKALPSPLDGDVEPSFFAGMYPMNCDSRYLRLTTSAIPNSQSLVSRWQLPLGAVVCPLAEPPEGEEVPIVNFATMGIVRCRRCRTYVNPYVTFTDGGRKWRCNICSLLNDVQSDYFAHLDATGKRVDLDQHPELTKGSVEFVAPAEYMVRPPMPPSYFFMIDVSISAVKSGMLEVMAQTIKSCLDRLPGSSRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRPVVEAFLDSLPSMFQDNINVESAFGPALKADFMVMSQLGGKLLICQSTLPSLGVGRLKLRGDDLRVYGTDKEHALRIPEDPFYKQMAADFTKFQVAVNLYAFSDKYTDIASLGTLAKYTGGQVYYYPSFHSAIHKDKLRHELARDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLIALPAVDCDKAYAMQFALEETLLTTQIVYFQVALLYTASCGERRIRVHTAAASVVAELGEMYRQADTGAVVSLLGRLAIEKSLSYKLEEARNAVQLKIVKALKEYRELYSVHHRVGSRMIYPESLKYLPLYGLSLCKSTALRGGYADAQLDERCAAGFTMMALPVKKMLKLLYPSLLRVDEYLVKTPTVDDDFARICKRLPLVAESLDSRGIYIFDDGFRFVVWFGRMLSPDLARNLVEEDSATDFSRNQVCLTERNNEMSRKLMGILKKLREADKSYYQLCHLVRQGEQPREGFFLLLNLVEDQVGGMSGYADWMLQIHRQVQQ 991
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00407 991 Gene3D - 268 720 - -
Smso28g00407 991 MobiDBLite consensus disorder prediction 113 137 - -
Smso28g00407 991 Pfam Gelsolin repeat 867 913 IPR007123 -
Smso28g00407 991 Pfam Sec23-Sec24 zinc finger 320 358 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Smso28g00407 991 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23-24 851 991 IPR036180 -
Smso28g00407 991 Gene3D von Willebrand factor, type A domain 397 634 IPR036465 -
Smso28g00407 991 Pfam Sec23-Sec24 beta-sandwich domain 637 720 IPR012990 -
Smso28g00407 991 MobiDBLite consensus disorder prediction 1 199 - -
Smso28g00407 991 Pfam Sec23-Sec24 trunk domain 395 631 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso28g00407 991 CDD Sec24-like 395 636 IPR041742 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso28g00407 991 MobiDBLite consensus disorder prediction 92 112 - -
Smso28g00407 991 Gene3D Severin 840 970 IPR029006 -
Smso28g00407 991 SUPERFAMILY vWA-like 395 634 IPR036465 -
Smso28g00407 991 Gene3D - 267 379 - -
Smso28g00407 991 Pfam Sec23-Sec24 helical domain 732 835 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso28g00407 991 SUPERFAMILY Helical domain of Sec23-24 732 839 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Smso28g00407 991 FunFam protein transport protein Sec24D isoform X1 397 634 - -
Smso28g00407 991 MobiDBLite consensus disorder prediction 159 186 - -
Smso28g00407 991 SUPERFAMILY beta-sandwich domain of Sec23-24 142 730 - -
Smso28g00407 991 SUPERFAMILY Zn-finger domain of Sec23-24 309 394 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Smso28g00407 991 Gene3D Sec23-Sec24 helical domain 721 989 - -
Smso28g00407 991 MobiDBLite consensus disorder prediction 36 67 - -
Smso28g00407 991 PANTHER SEC24-RELATED PROTEIN 16 991 IPR050550 GO:0000149(PANTHER)|GO:0008270(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00407 K14007 protein transport protein SEC24
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Event-related genes

Select Gene_1 Gene_2 Event_name
149670 Smso20g01634 Smso28g00407
338028 Smso28g00407 Smso1g03744
357459 Smso1g03744 Smso28g00407
429118 Smso1g03744 Smso28g00407
429661 Smso20g01634 Smso28g00407
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:124427979 Smso28g00407 Smso-Chr28:10653304 wgd
Smso Smso-Chr20:54159430 Smso28g00407 Smso-Chr28:10653304 wgd
Smso Smso-Chr28:10653304 Smso29g01435 Smso-Chr29:39573010 wgd