AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00411 ATGGGCAAGCCGTGGACGCCCCCACCATGTACCCTTATCATATCGAATGGCAGCCTTGAACCACCATTTTTTCTTACATTTGAACCAATTTGTTCTCCAATAACTCTGAAAATGGTGTTGTATACCGAATCTTCATCTTCATCAACACCGGCTTTGATAAACACCACACGTTTTGACAATGGAAGCTACACAGTGGAAAAGAAAAGCGTACCAAAATCTTCGAGTTCTGATACACCAAACCCGCCTTTGTACATTGTTTACCCTACAGATAACGGGACTTATCCCGTTATACTCTTTCTCCATGGCTTTTCGATCCCTAATACTTCGTATAGCGACCTCTTTGAGTTTATCGCATCTCATGGTTACATTATCGTCGCCCCCGGTCAGACTTTGTTAGGGCTCTTGACGGGTCTATGTGAATTTTCCGCGGTTAGTGATGTGGAGGATGCGGCTGAAACGGCTAATTGGATAAACAAAAACCAAGGCGAAAACCTCCAACTCGTACTCCCACATGATGTATCACCGGATCTCAAGAATGTAGCCCTAGCTGGCCATAGCAAAGGAGGAAAAGCAACATTTGCACTAGCGTTAGGTCATGCTAGTACAAGCCTTAAATTCAAAGCTCTTATTGGTTTAGATCCTGTTGCAGGCCGAGATACATCCAATAGGCTCGAACCTAAAATCTTAAACTACATACCCCAAAATTTCAACATACCCATGCCTATTGCCCTAATTGGGACAGGTTTGGGAGATGATGCGTGTTGCGGATGTATCCCACCCGCAGCCCCTTGGGGGTGTAACCATCCTTTTTTCTTTAATGAATGCAAACCCCCTGCTTGTTATTTTGTAGCCAAGGACTTTGGTCACATGGACATGGTTGATGATTGGTTGGTTAGGTTGTCGGGTATGTTTGTATGCAAGACCGGGAAGGGTTCGTATGCCGATATGAGAAGAGCTTGTGGAGGCATTTTTGTTGCATTTCTCAGCGCTTACATGTTTGATGACGCGAAAGATCTTATCGCCATCGTTGATTCACCCAATTCTGTTGCTCCTATTAAGCTCGATCCAGTTTTATGGCTTCAATCATGA 1089 44.35 MGKPWTPPPCTLIISNGSLEPPFFLTFEPICSPITLKMVLYTESSSSSTPALINTTRFDNGSYTVEKKSVPKSSSSDTPNPPLYIVYPTDNGTYPVILFLHGFSIPNTSYSDLFEFIASHGYIIVAPGQTLLGLLTGLCEFSAVSDVEDAAETANWINKNQGENLQLVLPHDVSPDLKNVALAGHSKGGKATFALALGHASTSLKFKALIGLDPVAGRDTSNRLEPKILNYIPQNFNIPMPIALIGTGLGDDACCGCIPPAAPWGCNHPFFFNECKPPACYFVAKDFGHMDMVDDWLVRLSGMFVCKTGKGSYADMRRACGGIFVAFLSAYMFDDAKDLIAIVDSPNSVAPIKLDPVLWLQS 362
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00411 362 Gene3D alpha-beta hydrolase 47 348 IPR029058 -
Smso28g00411 362 SUPERFAMILY alpha-beta-Hydrolases 75 296 IPR029058 -
Smso28g00411 362 Pfam Chlorophyllase 55 355 IPR017395 -
Smso28g00411 362 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 43 358 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00411 K08099 chlorophyllase [EC:3.1.1.14]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr28:10910314 Smso7g01821 Smso-Chr7:102326946 dispersed
Smso Smso-Chr28:10899678 Smso28g00411 Smso-Chr28:10910314 tandem