AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00428 ATGGATATCCTGAAGCAAGAGTTGCTAAAGAAGAGGCAAAGTCTCTCCGAAGCGACCGGCGGACGCAAGGTCTTCAAGCGTTCCGAGATCGAACAGAAACGAATCCAGAAGCTTCGCGAAGAAGAGAAACGAGACGCCGAGGTCAAACGCCTCCGTCAAAATCAGGATCAAAACGAGTCGAATTCGTCTGATCCTAATTCTTCATCGAATCCTAACTTCAAGCTCGATTCCGCGAAGTCGAAACCTGAATCCGGCGCCGGTTCGTCTTCAAAAGCCCTAACAAGTGACGAACAGAAGATAGACTCGCTAAACCTACCGAAACAGGAGGTTATTCGCCGGCTACGGTTTTTGAAACAACCTGTGACCCTGTTTGGGGAGAGTGATGATGACCGGTTGGATCGGTTGAAGTACGTGTTGAAGGCAGGGTTGTTTGAGCTTGACGATAGCGACATGACGGAGGGGCAGACGAATGATTTTCTGCGTGATATTGTTGAACTGAAAAAGAGGCAGAAGTCAGGTATAGTGAGTGACCGGAAAAGGAGGGCGCCGGATGAGTCAACGGAGGATAAAGATGGAGGAGGAGGAGGTGAAGATGATGTTAGTGGCGATGGCGGTTCGTCAGGAAATGATCAAGATAAGGATTTCAAACGTATGAAGGCGAATTTCTCTGAGCTTTGTGATGAGGATAAGATTCTTGTGTTTTTTAAGAAGTTGTTGATTGAGTGGAACCAGGAGTTGGATGAGATGACTGAACTGGAGAAGAGGACTGCGAAAGGGAAGTCGACATTCGCCACTTTTAAGCAGTGTGCTAGGTACTTGAATCCTCTATTCAAGTTCTGCAGGAAGAAGGTTCTGCCTGATGACATTAGACAAGCATTAATGCTAGTGGTGAATTGCTGCATGAAGCGAGACTACTTAGCTGCAATGGATCATTACATCAGAATGGCAATCGGCAACGCACCGTGGCCCATTGGAGTTACTATGGTTGGTATTCACGAACGTTCAGCCCGCGAAAAGATTTACACCAACAGTGTGGCCCATGTGATGAACGATGAAACAACTCGAAAATACCTGCAATCTGTTAAAAGATTAATGACGTTTTGTCAAAGGCGGTATCCAACAATGCCTTCAAAGGCAGTGGAGTTTAATAGTTTAGCAAATGGTAGTGATTTGCAGGCTTTATTGGCAGAAGAAAGGAGGAATTCAGGTGGCAGTCAACAGCAACAGCAGCAGCAAGAAGATAGCCTTTTGCTGCTGATGCCACCACCAACGGATGGCTAA 1281 46.53 MDILKQELLKKRQSLSEATGGRKVFKRSEIEQKRIQKLREEEKRDAEVKRLRQNQDQNESNSSDPNSSSNPNFKLDSAKSKPESGAGSSSKALTSDEQKIDSLNLPKQEVIRRLRFLKQPVTLFGESDDDRLDRLKYVLKAGLFELDDSDMTEGQTNDFLRDIVELKKRQKSGIVSDRKRRAPDESTEDKDGGGGGEDDVSGDGGSSGNDQDKDFKRMKANFSELCDEDKILVFFKKLLIEWNQELDEMTELEKRTAKGKSTFATFKQCARYLNPLFKFCRKKVLPDDIRQALMLVVNCCMKRDYLAAMDHYIRMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQALLAEERRNSGGSQQQQQQQEDSLLLLMPPPTDG 426
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00428 426 Pfam Prp18 domain 233 374 IPR004098 GO:0005681(InterPro)|GO:0008380(InterPro)
Smso28g00428 426 Gene3D - 76 158 IPR036285 -
Smso28g00428 426 Pfam pre-mRNA processing factor 4 (PRP4) like 110 137 IPR014906 -
Smso28g00428 426 SMART pr04-2 105 157 IPR014906 -
Smso28g00428 426 MobiDBLite consensus disorder prediction 55 101 - -
Smso28g00428 426 PANTHER PRE-MRNA SPLICING FACTOR-RELATED 1 385 IPR039979 GO:0000350(PANTHER)|GO:0005682(PANTHER)|GO:0008380(InterPro)|GO:0046540(PANTHER)|GO:0071021(PANTHER)
Smso28g00428 426 MobiDBLite consensus disorder prediction 399 417 - -
Smso28g00428 426 MobiDBLite consensus disorder prediction 1 103 - -
Smso28g00428 426 FunFam Pre-mRNA-splicing factor 18 205 376 - -
Smso28g00428 426 SUPERFAMILY Functional domain of the splicing factor Prp18 209 374 - -
Smso28g00428 426 FunFam Pre-mRNA-splicing factor 18 78 155 - -
Smso28g00428 426 MobiDBLite consensus disorder prediction 174 213 - -
Smso28g00428 426 SUPERFAMILY PRP4-like 98 140 IPR036285 -
Smso28g00428 426 MobiDBLite consensus disorder prediction 22 54 - -
Smso28g00428 426 Gene3D Functional domain of the splicing factor Prp18 207 376 - -
Smso28g00428 426 MobiDBLite consensus disorder prediction 393 426 - -
Smso28g00428 426 MobiDBLite consensus disorder prediction 174 197 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00428 K12817 pre-mRNA-splicing factor 18
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Event-related genes

Select Gene_1 Gene_2 Event_name
338017 Smso28g00428 Smso1g03720
357470 Smso1g03720 Smso28g00428
429095 Smso1g03720 Smso28g00428
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr12:1405756 Smso28g00428 Smso-Chr28:11416239 transposed
Smso Smso-Chr12:5364629 Smso28g00428 Smso-Chr28:11416239 transposed
Smso Smso-Chr1:123733224 Smso28g00428 Smso-Chr28:11416239 wgd