AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00429 ATGGCGACACGTGTCCTTCTACCACAATTCAATTCTACCTTCACCAATACCACCATTTCCCTCACCCGTCCACCAACCACCACCACCACCCGATTCTCAGTTCTCGCAATGGCGGAATCCACCCGTACCACCGTCCTCGTCACCGGAGCCGGCGGCAGAACTGGTCAAATAGTTTATAAGAAGCTGAAGGAGAGGTCAGGGGAGTATATCGCACGAGGTTTGGTTAGAACGGAGGAGAGTAAGGGGAAAATTGGCGGAGACGACGACGTTTTGATCGGAGATATAAGGAATGTAGAAAGTGTTGTTCCTGCTGTTGAAGGTGTAGATGCTGTTGTGATTTTGACTAGTGCTGTCCCCAAAATGAAACCGGGTTTTGATCCGAGTAAAGGTGGAAGGCCTGAGTTCTATTTTGAAGAGGGATCATATCCTGAACAGGTTGACTGGGAAGGGCAAAAGAATCAAATTGATGCTGCTAAAGCTGCTGGAGTGAAGCAAATTGTTCTGGTTGGCTCCATGGGTGGAACCAATCTTAACCACCCTTTAAACAGCCTGGGAAACGGAAATATACTGGTCTGGAAGAGAAAGGCTGAACAGTATCTAGCAGACTCTGGGATTCCATACACCATTATAAGGGCTGGGGGTTTGCAAGACAAGGAAGGTGGTGTTCGGGAGCTGCTAGTTGGAAAAGATGACGAGCTTCTCGAGACTGAAACTAGAACCATTGCCAGAGCAGATGTGGCTGAAGTCTGTATACAGGTGTTGCAATACGAGGAGGCGAAATTCAAGGCATTTGATCTTGCATCCAAACCCGAGGGAAGTGGAACACCGACAAAAGACTTCAAAAGCTTATTTTCTCAGGTCACTACTCGGTTTTAA 876 47.6 MATRVLLPQFNSTFTNTTISLTRPPTTTTTRFSVLAMAESTRTTVLVTGAGGRTGQIVYKKLKERSGEYIARGLVRTEESKGKIGGDDDVLIGDIRNVESVVPAVEGVDAVVILTSAVPKMKPGFDPSKGGRPEFYFEEGSYPEQVDWEGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELLVGKDDELLETETRTIARADVAEVCIQVLQYEEAKFKAFDLASKPEGSGTPTKDFKSLFSQVTTRF 291
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00429 291 Gene3D - 41 291 - -
Smso28g00429 291 Pfam NAD(P)H-binding 49 255 IPR016040 -
Smso28g00429 291 CDD SDR-a5 44 266 - -
Smso28g00429 291 FunFam Uncharacterized protein At5g02240 41 291 - -
Smso28g00429 291 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 38 291 IPR044163 GO:0009507(PANTHER)|GO:0016491(InterPro)
Smso28g00429 291 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 269 IPR036291 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00429 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
338016 Smso28g00429 Smso1g03717
357471 Smso1g03717 Smso28g00429
429094 Smso1g03717 Smso28g00429
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr28:11446125 Smso28g00999 Smso-Chr28:47267887 dispersed
Smso Smso-Chr1:123711385 Smso28g00429 Smso-Chr28:11446125 wgd