AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso28g00440 | ATGGATTTCTTCAGATCCATATTAGCAGATGATCCAGAGCCTGAAACCCTAGCTAATCACGAAGATTCCGATACTGATCCCCTCCAAATTCAATCGCCAAAACATCTAGAAATCGAAGGCGATGAAGACGACGATTCCACTTCGAATCTTAATTCGTCGGAAGACGGAAGCGGCAGTGGCGGTGGCGGTGGTGGCGGTCTGTGGAGCTTCGGAGATCTAGTGAAAACTTTGACTACCAAATCCGAATCCGTGTTCGAAACATACCGTCGCGATCTGAAGGAATTCAGAACCGGTTTGAGGAAAGAATCCGATCTGTTTCGTGAAGTTGCGAGCCGTGCGGTGAAGGAGTTACCGTCTTCTATCGACGTCGGTACGTCGGCGATTGACGGAGTATTGAAATCGACGGCGGATATTATCGCGCAAGGTAAGGAAGCTCTGTTTTTACCTTCCGATGTTGATGCTTCTGAAAAACGTAATTCTAGTGATCGTAGTGGTTTGGATTCGATGCGGTATAGTCGTTTTGATGCTCAATTGAATGCGATTAGGAGTGATGCGAGAGCTTACTGTGAGGATCCGGAGGATGTAGATGATTATAATAACTGGAAGTTAGGGTTTGTGGTTGGGGATAGGAGAGATGAAATTGAACAATTAGTTGGAGAGGATGGGGCTTTAGAGGGAATTTACTCCCAAATTGTTCCAAATGAGGTTGATGATGGAACATTTTGGTTTAGGTATTTCTATAAGGTGCATAAGCTTAAACAGCAAGAGGAAATGAGAGCTAGGTTTGTGAAGAGATCGTTATCGGTGGATGATGATGAAGAAGAATTGAGTTGGGATGTTGATGATGAAGATGAAGAACAACAACAACCTCAACAACAAGAAGCTGATCAGTTAAGATCAAGTACCTCTAAAAGCCAAGATTCGGTTGATGAAATTAAAACTCAAAGTTCTAAGATTGTTGATGAAGATAAGGAGATGACAGCCAATGTGGTTAGTGTTGATAATAACAATGTAGAGGAATCGAAAGCTGAATCAGTGCGTAAATATGATGAAAAGGTTGATTTCGAAGTGGAATCAGGTGAAATTGAAGATAGTAATGTCACTGTTAAATCAGACCAACCTTCATTACAGGAGGATGAAGATCTCGAGTGGGATGAGATTGAAGATCTTGGGAAAACCGATGATAAGAATGTCTCTCATGGTGACACGACAAACAAAGGCGACTTGCGCAAGCGATTGAGTACTGCTGCAGATGAGGACGAGGATTTGAGTTGGGATATTGAAGATGATGACGACGAGCCTCTAAAACCAGGTACGCGTAACATCAATTCAATCGCCTAA | 1341 | 42.8 | MDFFRSILADDPEPETLANHEDSDTDPLQIQSPKHLEIEGDEDDDSTSNLNSSEDGSGSGGGGGGGLWSFGDLVKTLTTKSESVFETYRRDLKEFRTGLRKESDLFREVASRAVKELPSSIDVGTSAIDGVLKSTADIIAQGKEALFLPSDVDASEKRNSSDRSGLDSMRYSRFDAQLNAIRSDARAYCEDPEDVDDYNNWKLGFVVGDRRDEIEQLVGEDGALEGIYSQIVPNEVDDGTFWFRYFYKVHKLKQQEEMRARFVKRSLSVDDDEEELSWDVDDEDEEQQQPQQQEADQLRSSTSKSQDSVDEIKTQSSKIVDEDKEMTANVVSVDNNNVEESKAESVRKYDEKVDFEVESGEIEDSNVTVKSDQPSLQEDEDLEWDEIEDLGKTDDKNVSHGDTTNKGDLRKRLSTAADEDEDLSWDIEDDDDEPLKPGTRNINSIA | 446 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso28g00440 | 446 | ProSiteProfiles | BSD domain profile. | 201 | 253 | IPR005607 | - | |
| Smso28g00440 | 446 | SMART | wurzfinal6 | 201 | 253 | IPR005607 | - | |
| Smso28g00440 | 446 | Pfam | BSD domain | 201 | 257 | IPR005607 | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 273 | 290 | - | - | |
| Smso28g00440 | 446 | Gene3D | BSD domain | 160 | 263 | IPR035925 | - | |
| Smso28g00440 | 446 | PANTHER | SYNAPSE-ASSOCIATED PROTEIN | 37 | 426 | IPR051494 | GO:0005737(PANTHER) | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 273 | 446 | - | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 389 | 419 | - | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 314 | 328 | - | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 291 | 313 | - | - | |
| Smso28g00440 | 446 | SUPERFAMILY | BSD domain-like | 170 | 259 | IPR035925 | - | |
| Smso28g00440 | 446 | MobiDBLite | consensus disorder prediction | 340 | 355 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso28g00440 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 338011 | Smso28g00440 | Smso1g03701 | |
| 357476 | Smso1g03701 | Smso28g00440 | |
| 429084 | Smso1g03701 | Smso28g00440 | |
| 429676 | Smso20g01739 | Smso28g00440 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr28:11703978 | Smso8g03066 | Smso-Chr8:96697408 | dispersed | |
| Smso | Smso-Chr1:110825394 | Smso28g00440 | Smso-Chr28:11703978 | transposed | |
| Smso | Smso-Chr20:4494522 | Smso28g00440 | Smso-Chr28:11703978 | transposed | |
| Smso | Smso-Chr29:48010653 | Smso28g00440 | Smso-Chr28:11703978 | transposed | |
| Smso | Smso-Chr1:123397755 | Smso28g00440 | Smso-Chr28:11703978 | wgd | |
| Smso | Smso-Chr20:59026757 | Smso28g00440 | Smso-Chr28:11703978 | wgd | |
| Smso | Smso-Chr28:11703978 | Smso29g01522 | Smso-Chr29:41705749 | wgd | |
| Smso | Smso-Chr28:11703978 | Smso4g02452 | Smso-Chr4:42513670 | wgd |