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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00446 ATGTTGTTCTTCTCGTACTTCAAGGATTTGGTTGGAAGAGAAGTGACCGTGGAATTGAAGAATGATTTAGCGATTCGAGGAACTCTTCATTCGGTCGATCAATATCTCAATATCAAACTCGAGAACACCAGAGTCGTTGATCAAGACAAGTTTCCTCACATGCTTTCGGTGAGAAACTGTTTCATCAGAGGATCAGTGGTGAGGTATGTGCAGTTACCACCGGATGGAGTCGACATCGATCTGCTCCATGATGCCACTAGAAGAGAAGCTCGGGGCGGTTAG 282 45.39 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKFPHMLSVRNCFIRGSVVRYVQLPPDGVDIDLLHDATRREARGG 93
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00446 93 PIRSF Lsm2 1 93 IPR016654 GO:0006397(InterPro)
Smso28g00446 93 SMART Sm3 5 72 IPR001163 -
Smso28g00446 93 SUPERFAMILY Sm-like ribonucleoproteins 3 92 IPR010920 -
Smso28g00446 93 ProSiteProfiles Sm domain profile. 2 76 IPR047575 GO:0003723(InterPro)
Smso28g00446 93 CDD LSm2 2 90 IPR016654 GO:0006397(InterPro)
Smso28g00446 93 Gene3D - 1 92 - -
Smso28g00446 93 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 2 91 IPR016654 GO:0000398(PANTHER)|GO:0000932(PANTHER)|GO:0003723(PANTHER)|GO:0005688(PANTHER)|GO:0006397(InterPro)|GO:0046540(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:1990726(PANTHER)
Smso28g00446 93 Pfam LSM domain 6 71 IPR001163 -
Smso28g00446 93 FunFam U6 snRNA-associated Sm-like protein LSm2 1 93 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00446 K12621 U6 snRNA-associated Sm-like protein LSm2
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Event-related genes

Select Gene_1 Gene_2 Event_name
338009 Smso28g00446 Smso1g03671
357478 Smso1g03671 Smso28g00446
429077 Smso1g03671 Smso28g00446
429674 Smso20g01734 Smso28g00446
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:122543424 Smso28g00446 Smso-Chr28:11913079 wgd
Smso Smso-Chr20:58587140 Smso28g00446 Smso-Chr28:11913079 wgd
Smso Smso-Chr28:11913079 Smso29g01517 Smso-Chr29:41621973 wgd