AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso28g00474 | ATGACACCTTCCACTAAACTTCTTCTTCAAGTCCTCGTGATCTCCACCGTGATTCTCCGTCCGGCATCCGCCGGCATCGCCGATTTCAACTGGCTGTCGAAGCAAGGAGGAGTGTGCAGCGGCTCAATCGCGGAGTGTATGGGCGGAGGAGAGTTGGAGATGGAATCGGAGAGCATGAGGCGTATTTTAGCAACGACGAGGTACATCAGCTATGGTGCGCTGCAAGGGAACAATGTGCCGTGCTCGCAGAGAGGTGCGTCGTATTATAACTGTCGATCAGGTGGTCAGGCTAATCCGTACCAACGTGGTTGCAGTACGATTACTCGTTGCCGACGGTGA | 339 | 54.28 | MTPSTKLLLQVLVISTVILRPASAGIADFNWLSKQGGVCSGSIAECMGGGELEMESESMRRILATTRYISYGALQGNNVPCSQRGASYYNCRSGGQANPYQRGCSTITRCRR | 112 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso28g00474 | 112 | Pfam | Rapid ALkalinization Factor (RALF) | 51 | 112 | IPR008801 | - | |
| Smso28g00474 | 112 | PANTHER | RAPID ALKALINIZATION FACTOR-LIKE | 9 | 112 | - | GO:0009506(PANTHER)|GO:0019722(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso28g00474 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 141564 | Smso10g00698 | Smso28g00474 | |
| 149505 | Smso20g00809 | Smso28g00474 | |
| 337992 | Smso28g00474 | Smso1g03628 | |
| 357495 | Smso1g03628 | Smso28g00474 | |
| 429052 | Smso1g03628 | Smso28g00474 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr26:387902 | Smso28g00474 | Smso-Chr28:13098624 | dispersed | |
| Smso | Smso-Chr28:13098624 | Smso9g00418 | Smso-Chr9:9297879 | dispersed | |
| Smso | Smso-Chr1:121705525 | Smso28g00474 | Smso-Chr28:13098624 | wgd | |
| Smso | Smso-Chr10:7328502 | Smso28g00474 | Smso-Chr28:13098624 | wgd | |
| Smso | Smso-Chr20:14013190 | Smso28g00474 | Smso-Chr28:13098624 | wgd |