AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00476 ATGGAAATTACCGACGGACCTTCACCGGCCATAACATCTCCGTCGATAAAACCAATCAACAAGAGCGCGATCCACAGAATCTGCTCCGGCCAAGTGATTTTGGACCTCCCTTCCGCCGTCAAGGAACTGGTCGAGAACAGCTTGGACGCCGGCGCCACAAGCATCGAGATTTCATTGAAGGAGTACGGCGAAGAATCGTTTCAGGTCGTTGATAACGGTTGCGGCATTTCGCCTCACAATTTCAAGGCTCTAGCACTGAAGCATCATACGTCGAAGTTAACGGATTTTCCTGATCTTCAATCGTTGACGACGTTCGGGTTTAGAGGGGAAGCTCTGAGTGCTCTGTGTAACTTGGGGGATTTGACAGTGGAAACAAGGACACAAAATGAGAAGATTGCGACTCACTTGACTTTTGATCGGTCTGGTTTGCTTACTGATGAGAGAAAGACAGCGCGGCAGGTTGGTACCACTGTTATGGTGAAGAAGTTGTTCTCGAACTTGCCTGTGCGATGCAAAGAGTTCCATCGGAACATTCGGAAGGAGTATGGAAAGTTGATTTCGTTACTGAATGCCTATGCTCTTACTGCAAAAGGGGTTCGGTTGGTTTGTAAAAATACGACTGGGAAAAACAAAACCTCTGCAGTACTTACAACTCAGGGAAGTGGTTCCCTCAAAGATAATATCATTACAGTGTTTGGCATGAACACTTTCACCTGCTTAGAGCCTGTGAATCTATTTATATCAGATACTTGCCAAGTGGACGGCTTTCTTTCTAAATCTGGCAATGGTAGTGGACGGAATTTAGGTGATCGACAATATTTTTTTGTTAATGGCCGACCTGTTGACATGCCAAAAGTCAGCAAGCTTGTAAATGAATTGTATAGATCTGCAAACTCAAAGCAATATCCAATTGCAATAATGAATTTTGTTGTTCCAGCCAGCATTTGTGATGTGAATGTGACCCCCGACAAAAGAAAAATCTTTTTTTCTGATGAAGGGTCGGTTTTAAAGTCATTTAAAGAAGCTTTATTGAAGATCTATTCCCCAGATCTTGCTAGCTTCTCGGTACAGAAAGCTGAGGAACTCGGTCAAGATAATCAGTCTTTTTCACAGTTTTCAGTAAAGCAAGTATCACCAAAGGATAGTGATTGTAAAAAAGAAACTATTAGTGTTGTGAATGAAGATGAAGAGACCTTAGGATCCTCACCTGCTGTTACTTTGATTAATGTCGATGATTATAGTTTATCAAAGCGAGATTTTACACTAAAATCTCACAGCGTGAAGAAAACTGATACCGTTTCTAGGAGCTACAGTAAGATTCATGCAGTTTTAACTAACAACACTACTTATAATCGGCAGGCATTATTATCATTCAACTCAACAGTGCATAAAAATCTTATTGAAAGAACAGATTCTCCTCGTTCTGTAGGTCCTGTTCAGTCATTGCTTACATCTTTTGTTGCTGTAAACAAAAGAAAGCATGAAAGCAGCAGTAATACGTTATCTGAGATCCCTGTTTTTAGAAATGGGCCCACCGTTCGTCAATCAGTTGATCAAAGTTATAATTCAAAATCTACATCTGCAAAATCTTCAGTGAAATGTAACGTGGTTGATGACTCTGATGAAGTTGATCTGAATGAGTCAAAGCCTTCCAACCGTACTCTGGTGGATGAACGCTATGTTGATTTAGAAGTCTCTCCTGTTAAAGTTGTTAAAACTTCTGGACAACTTGACGAGGACATCATAAGAATCGAGACACCTGGATCTGTTTCAAAATCAGTATTAAATGCTTCATCTCCCGAAAAAATTAATGCTGACATTCCATTAGATTCTTCTGAGCCACCTTCAGATTCACCAGTGTCTTCTTCCTGCTCAAAGATGTGTTATACGATGCAGTTTAGTTTTGAGGAACTAAAGAAAAAGAGGCAGCAAAAATTAGCAGCATTTCGAGCAGGCAAAAACACACCAGGAATATCAAAGACTAAAGGATGCTATACTGATGCAACATTAGAGATTTCTCAAGTGGTAAAAGAGGATGCTAAAGAGGAAGCTTTATCTGCAGCAACAAGTGAATTAGAAAAGTTATTCAAAAAGGAATATTTTGGCCGCATGAAGGTTATTGGGCAGTTCAATCTTGGATTTATTATTGGCAAGTTAGACCAAGACCTTTTTGTGGTGGATCAGCATGCTGCGGATGAAAAATACAATTATGAGCGTTTGTCACGGTCCACCATCTTGAACCAACAACCTTTACTGAGGCCAATTTCGGTGGAGTTATCTCCTGAAGAAGAAATAATCGTCTCGATGCACATGGATACTATCAGGAAAAATGGATTTTCATTAGAAGAAGACGTGGACGCTCCTCCTGGGCGCCATCATAAATTAAAAGCCGTCCCCTTTAGTAAAAACATAACTTTTGGTGTTGCAGACTTGAAGGAGCTTATAAATATTTTGGCTGATAGTCAAGGAGAATGTTCGATTATTGGTACTTATAAGATGGACACTGCTGATTCAGTGTGCCCCCCAAGAGTACGTGCAATGTTAGCATCACGTGCCTGCAGATCATCTGTTATGATCGGGGATCCACTTGGAAGAAACGAGATGCAAAAGATACTTGAGCATTTGATGGGTTTAAGATCACCATGGAATTGTCCACATGGCAGACCGACAATGCGCCACTTGGTGGATTTAACAACCGTGCGTAAAAGGTCAAACGAAGACGATTTAGTTTAG 2733 40.83 MEITDGPSPAITSPSIKPINKSAIHRICSGQVILDLPSAVKELVENSLDAGATSIEISLKEYGEESFQVVDNGCGISPHNFKALALKHHTSKLTDFPDLQSLTTFGFRGEALSALCNLGDLTVETRTQNEKIATHLTFDRSGLLTDERKTARQVGTTVMVKKLFSNLPVRCKEFHRNIRKEYGKLISLLNAYALTAKGVRLVCKNTTGKNKTSAVLTTQGSGSLKDNIITVFGMNTFTCLEPVNLFISDTCQVDGFLSKSGNGSGRNLGDRQYFFVNGRPVDMPKVSKLVNELYRSANSKQYPIAIMNFVVPASICDVNVTPDKRKIFFSDEGSVLKSFKEALLKIYSPDLASFSVQKAEELGQDNQSFSQFSVKQVSPKDSDCKKETISVVNEDEETLGSSPAVTLINVDDYSLSKRDFTLKSHSVKKTDTVSRSYSKIHAVLTNNTTYNRQALLSFNSTVHKNLIERTDSPRSVGPVQSLLTSFVAVNKRKHESSSNTLSEIPVFRNGPTVRQSVDQSYNSKSTSAKSSVKCNVVDDSDEVDLNESKPSNRTLVDERYVDLEVSPVKVVKTSGQLDEDIIRIETPGSVSKSVLNASSPEKINADIPLDSSEPPSDSPVSSSCSKMCYTMQFSFEELKKKRQQKLAAFRAGKNTPGISKTKGCYTDATLEISQVVKEDAKEEALSAATSELEKLFKKEYFGRMKVIGQFNLGFIIGKLDQDLFVVDQHAADEKYNYERLSRSTILNQQPLLRPISVELSPEEEIIVSMHMDTIRKNGFSLEEDVDAPPGRHHKLKAVPFSKNITFGVADLKELINILADSQGECSIIGTYKMDTADSVCPPRVRAMLASRACRSSVMIGDPLGRNEMQKILEHLMGLRSPWNCPHGRPTMRHLVDLTTVRKRSNEDDLV 910
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00476 910 Gene3D - 709 894 IPR042120 -
Smso28g00476 910 NCBIfam DNA mismatch repair endonuclease MutL 16 388 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Smso28g00476 910 FunFam Mismatch repair endonuclease pms1, putative 746 858 - -
Smso28g00476 910 CDD HATPase-MutL-MLH-PMS-like 24 205 - -
Smso28g00476 910 SMART MutL-C-2 706 863 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Smso28g00476 910 FunFam DNA mismatch repair protein PMS1 234 353 - -
Smso28g00476 910 Pfam MutL C terminal dimerisation domain 707 863 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Smso28g00476 910 Pfam DNA mismatch repair protein, C-terminal domain 228 346 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Smso28g00476 910 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 38 141 - -
Smso28g00476 910 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 16 902 IPR038973 GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0032300(PANTHER)|GO:0032300(InterPro)|GO:0032389(PANTHER)|GO:0140664(InterPro)
Smso28g00476 910 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 348 IPR020568 -
Smso28g00476 910 SMART DNA-mis-repair-2 228 348 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Smso28g00476 910 Gene3D - 12 232 IPR036890 -
Smso28g00476 910 Gene3D - 240 351 IPR014721 -
Smso28g00476 910 FunFam Mismatch repair endonuclease pms1, putative 13 232 - -
Smso28g00476 910 SUPERFAMILY DNA mismatch repair protein MutL 702 894 IPR037198 -
Smso28g00476 910 Gene3D - 746 858 IPR042121 -
Smso28g00476 910 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 30 231 IPR036890 -
Smso28g00476 910 CDD MutL-Trans-hPMS-2-like 223 348 - -
Smso28g00476 910 ProSitePatterns DNA mismatch repair proteins mutL - hexB - PMS1 signature. 106 112 IPR014762 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00476 K10858 DNA mismatch repair protein PMS2
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Event-related genes

Select Gene_1 Gene_2 Event_name
337990 Smso28g00476 Smso1g03626
357497 Smso1g03626 Smso28g00476
429050 Smso1g03626 Smso28g00476
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr14:78477257 Smso28g00476 Smso-Chr28:13155305 dispersed
Smso Smso-Chr22:62041554 Smso28g00476 Smso-Chr28:13155305 dispersed
Smso Smso-Chr7:87139431 Smso28g00476 Smso-Chr28:13155305 transposed
Smso Smso-Chr1:121681940 Smso28g00476 Smso-Chr28:13155305 wgd