Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso28g00592	ATGGACACTTCAACCCTAGAATCTCAAATCCGATCGGACAACTTCGTCACATACGAATCCCCTTATACTCTCTACTCCATGGCCATCTCCTCCTCCTCCCGTTCCTCCCACCGGAGAATCGCCGTCGGAAGCTTCATCGAAGAATACGCCAATCGAGTCGACATCCTAACATTCGACGAAGAAACTCTCTCCGTCAAACTAAACCCTAACCTCTCAATCGACCATCCCTATCCCCCTACCAAACTCATGTTCCACCCTAACCCTAAGCTATCCAACGACATCCTAGCCTCTTCCGGCGACTTCCTCCGCCTCTACGGTGTCCACAGCACCTCAATCGAACAAATCTCCGTCCTCAACAACAGCAAAAGCAGCGAATTCTGCGCGCCGTTGACTTCCTTTGACTGGAACGAGCTCGAACCGAGGCGAATCGGTACTTCCTCAATTGACACCACGTGTACGATTTGGGATGTGGAGAAAGGTGTTGTGGAGACGCAATTGATTGCTCATGATAAGGAGGTTCATGATATTGCTTGGGGGGAAGCAGGTGTGTTTGCATCGGTTTCAGCCGATGGATCAGTTAGGGTTTTTGACCTTCGCGATAAGGAGCATTCGACGATAATATACGAAAGCCCTCAGCCGGACACGCCGTTGTTACGATTGGCATGGAACAAACAGGATTTGAGGTATATGGCCACAATTTTGATGGACAGTAACAAGATTGTGATTCTTGATATTCGGTCGCCTACATTGCCTGTAGCTGAATTGGAGAGACATAAAGGGAGTGTGAATGCGATTACTTGGGCTCCAACGAGTTGCCAGCATATTTGTTCGGGTGGGGATGATTCGCAGGCTTTGATATGGGAATTGCCCACTGTTGCTGGGCCGAATGGGATTGATCCTATGTCGGTGTATACGGCTGGGGCAGAGATTAACCAGGTGCAGTGGTCGGCTGCGATGCCTGATTGGATTGGTATCGCATTCGCGAACAAGATGCAGCTTCTGAAAGTGTGA	1011	49.65	MDTSTLESQIRSDNFVTYESPYTLYSMAISSSSRSSHRRIAVGSFIEEYANRVDILTFDEETLSVKLNPNLSIDHPYPPTKLMFHPNPKLSNDILASSGDFLRLYGVHSTSIEQISVLNNSKSSEFCAPLTSFDWNELEPRRIGTSSIDTTCTIWDVEKGVVETQLIAHDKEVHDIAWGEAGVFASVSADGSVRVFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILDIRSPTLPVAELERHKGSVNAITWAPTSCQHICSGGDDSQALIWELPTVAGPNGIDPMSVYTAGAEINQVQWSAAMPDWIGIAFANKMQLLKV	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso28g00592	336	ProSitePatterns	Trp-Asp (WD) repeats signature.	275	289	IPR019775	-
	Smso28g00592	336	SMART	WD40-4	248	288	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	SMART	WD40-4	159	197	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	SMART	WD40-4	111	156	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	Pfam	WD domain, G-beta repeat	251	287	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	Pfam	WD domain, G-beta repeat	164	197	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	PANTHER	WD REPEAT CONTAINING PROTEIN	7	336	IPR045159	GO:0005634(PANTHER)
	Smso28g00592	336	Gene3D	-	5	335	IPR015943	GO:0005515(InterPro)
	Smso28g00592	336	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	255	289	-	-
	Smso28g00592	336	ProSiteProfiles	Trp-Asp (WD) repeats profile.	255	289	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	FunFam	WD repeat-containing protein LWD1	11	335	-	-
	Smso28g00592	336	ProSiteProfiles	Trp-Asp (WD) repeats profile.	166	206	IPR001680	GO:0005515(InterPro)
	Smso28g00592	336	SUPERFAMILY	WD40 repeat-like	24	291	IPR036322	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso28g00592	K11805	DDB1- and CUL4-associated factor 7

Event-related genes

Select	Gene_1	Gene_2	Event_name
	337932	Smso28g00592	Smso1g03430
	357555	Smso1g03430	Smso28g00592
	428964	Smso1g03430	Smso28g00592

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Smso	Smso-Chr25:59616585	Smso28g00592	Smso-Chr28:20004470	dispersed
	Smso	Smso-Chr1:117395413	Smso28g00592	Smso-Chr28:20004470	wgd