AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00655 ATGGCCACCAATTCTTTCCAATCTCTGAACTACCGCCACCGCACACCGTCACTTGGCCGACGGCGGTCACTGGACTCTCCGCCGCCGACGCTAGCACTTACCTCAAAGTCTAACGACAATTACAAGCAGACGATCGCCATCTCCTCCGCCGTAAAAACATTCTCTTTGTCCTCCTCCACCTCCGCGTCCGCCCAGACCACCTCGTTCGACCACCTCGGCCGCTTGCTCGCCGCCAAGGACTTCCCAGAAGCTGACAACGAAACGCGCCGCCTCCTAATCTCACTCGTCGGCGAAGCCGCACAGAAACGCGGATACGTCTTCTTCTCCGAAGTCCAATTCATATCGAAATCAGATCTCCAAACCATAGACCAACTGTGGAGAAGTAACAGCAATAATAAATTCGGATACGGCGTCCAGAAACGACTGTGGGAAAAATCAGACAAAGATTTCACCAGATTCTTCATAAAAGTTGGATGGATGAAGAAGCTGGACACTGAAATCTTGCAATACAACTACCGAGCTTTTCCGGATGAATTCATGTGGGAATTGAACGAGGAAACGCCAGAAGGGCACCTGCCATTGACGAATGCTCTCAGAGGAACGCAACTGCTCACTTGCATTTTAACCCATCCGACATTTGCAGATGAAGAACAAGAAGAATCTGCCATCGATGAGGAAGAAGAAAAACAACAGCTGCCAGTTGGCAAAGGACTGTTCAAAACCAATTACAGTTTTTAA 738 49.46 MATNSFQSLNYRHRTPSLGRRRSLDSPPPTLALTSKSNDNYKQTIAISSAVKTFSLSSSTSASAQTTSFDHLGRLLAAKDFPEADNETRRLLISLVGEAAQKRGYVFFSEVQFISKSDLQTIDQLWRSNSNNKFGYGVQKRLWEKSDKDFTRFFIKVGWMKKLDTEILQYNYRAFPDEFMWELNEETPEGHLPLTNALRGTQLLTCILTHPTFADEEQEESAIDEEEEKQQLPVGKGLFKTNYSF 245
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00655 245 MobiDBLite consensus disorder prediction 1 37 - -
Smso28g00655 245 Gene3D - 12 130 - -
Smso28g00655 245 PANTHER TETRAPYRROLE-BINDING PROTEIN, CHLOROPLASTIC 1 245 IPR008629 GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0046906(PANTHER)
Smso28g00655 245 FunFam Tetrapyrrole-binding protein, chloroplastic 131 219 - -
Smso28g00655 245 Pfam GUN4-like 63 211 IPR008629 -
Smso28g00655 245 CDD GUN4 71 208 IPR008629 -
Smso28g00655 245 SUPERFAMILY GUN4-like 63 213 IPR037215 -
Smso28g00655 245 Gene3D - 131 218 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00655 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337914 Smso28g00655 Smso1g03321
357573 Smso1g03321 Smso28g00655
428940 Smso1g03321 Smso28g00655
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:114628649 Smso28g00655 Smso-Chr28:28260751 wgd