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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00674 ATGGAAAATTTATTGAGCAACTTATTCGGTGTCGATGGAAATTTGCACCCGAAACTGAAACTCATATATTTGACCCTCCCTATTCTTTACTGTAAATCGTTTGATTCTAAAGCCATGAAGAAAAAGCTCGATACCCGCTTCCCTGCCGCCCGGATTAAAAAGATAATGCAAGCCGATGAGGATATTGGAAAGATTGCCATGGCCGTACCGGTCTTAGTTTCCAAAGCGTTGGAATTGTTCTTGCAAGATCTTTGTGATCGTACTTATGACATCACTATTCATAGAGGAGCAAAGACTGTTAACTCACTGCATTTAAAGCACTGTGTTCAAAGCTACAATGTGTATGATTTTTTGAGGGAAGTTGTCAGCAAGGTCCCTGACTATGGCCATTCAGAAGCAGGTGGTGATGATCGTACCATGGCGAAGAGAAAGAAAGCTGCTGCAGATGAAATGAATGAAAGTGATGAAGAATCGAAGAGAAATCGGATGAATGAAGCAGGGCACACAAGCAGCAGTGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGTCGAGGTAGAGGTAGAGGAAGAGGCCGTGGCAGAGGCAGAGTATCTGCAGAACGAGATCCTCCCCCGATTGAACCAGAATCAGAATCTTCCACATTATCTGTTCAGCAGAGCAGCAAGCCCAACCCAGGCCCAACCGACAACCATTCGGAGTCCATCAAGAGTGATGTTGCAGTCGACATTATTCCATGTACTGGTGACAGAGACTTTGACCTGAATACTGGTTTTGATGAGAATATAGATAAAGTGTCTGCTGTATCTGATGGTCGTGCTACTCCACCACCACCTCTAACAACAGTGGCAGGAGAACCTAGTGAAATTGCAAACAGCGAGTATTCCAGTTGGTGCGTTTCAGAAATAGACAGGATGGCCATTGACCCTCATCTTGCACAAGCCAACTCAAGGTTGGATGAGGAAGATGAAGACTACGATGAAGAATAG 999 45.55 MENLLSNLFGVDGNLHPKLKLIYLTLPILYCKSFDSKAMKKKLDTRFPAARIKKIMQADEDIGKIAMAVPVLVSKALELFLQDLCDRTYDITIHRGAKTVNSLHLKHCVQSYNVYDFLREVVSKVPDYGHSEAGGDDRTMAKRKKAAADEMNESDEESKRNRMNEAGHTSSSGRGRGRGRGRGRGRGRGRGRGRGRGRGRVSAERDPPPIEPESESSTLSVQQSSKPNPGPTDNHSESIKSDVAVDIIPCTGDRDFDLNTGFDENIDKVSAVSDGRATPPPPLTTVAGEPSEIANSEYSSWCVSEIDRMAIDPHLAQANSRLDEEDEDYDEE 332
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00674 332 Gene3D Histone, subunit A 32 124 IPR009072 GO:0046982(InterPro)
Smso28g00674 332 MobiDBLite consensus disorder prediction 128 164 - -
Smso28g00674 332 FunFam dr1-associated corepressor homolog 39 124 - -
Smso28g00674 332 SUPERFAMILY Histone-fold 35 126 IPR009072 GO:0046982(InterPro)
Smso28g00674 332 MobiDBLite consensus disorder prediction 270 289 - -
Smso28g00674 332 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 46 109 IPR003958 -
Smso28g00674 332 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 41 225 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Smso28g00674 332 MobiDBLite consensus disorder prediction 128 241 - -
Smso28g00674 332 MobiDBLite consensus disorder prediction 175 196 - -
Smso28g00674 332 MobiDBLite consensus disorder prediction 197 211 - -
Smso28g00674 332 MobiDBLite consensus disorder prediction 213 238 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00674 K21752 Dr1-associated corepressor
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Event-related genes

Select Gene_1 Gene_2 Event_name
337909 Smso28g00674 Smso1g01153
356789 Smso1g01153 Smso28g00674
357577 Smso1g03262 Smso28g00674
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr21:18902831 Smso28g00674 Smso-Chr28:33122351 dispersed
Smso Smso-Chr28:33122351 Smso4g01612 Smso-Chr4:23458000 dispersed
Smso Smso-Chr1:23602571 Smso28g00674 Smso-Chr28:33122351 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g01952 WGDA 73 197 CCAAT-HAP5 Transcription Factor family AT1G07980 47.619 1.30e-29 107.0
Smso28g00674 SST 1 140 CCAAT-HAP5 Transcription Factor family AT3G12480 71.429 7.58e-68 213.0
Smso28g01218 WGDA 90 197 CCAAT-HAP5 Transcription Factor family AT1G07980 38.806 6.94e-22 85.1
Smso25g00273 SST,WGDA 69 145 CCAAT-HAP5 Transcription Factor family AT1G54830 65.385 3.59e-31 108.0
Smso24g00390 SST,WGDA 40 203 CCAAT-HAP5 Transcription Factor family AT1G08970 75.449 6.93e-77 230.0
Smso21g01597 ACH,SST 1 180 CCAAT-HAP5 Transcription Factor family AT3G12480 67.956 2.55e-70 218.0
Smso20g02221 WGDA 91 199 CCAAT-HAP5 Transcription Factor family AT1G07980 49.541 2.23e-29 106.0
Smso18g00078 SST,WGDA 7 122 CCAAT-HAP5 Transcription Factor family AT5G43250 57.377 4.61e-41 131.0
Smso18g02319 WGDA 69 148 CCAAT-HAP5 Transcription Factor family AT1G54830 62.963 5.96e-32 110.0
Smso18g02563 SST,WGDA 1 282 CCAAT-HAP5 Transcription Factor family AT3G12480 44.828 1.20e-61 195.0
Smso12g01644 SST 40 219 CCAAT-HAP5 Transcription Factor family AT1G08970 67.021 2.47e-78 234.0
Smso11g01404 SST 1 219 CCAAT-HAP5 Transcription Factor family AT1G08970 56.452 8.17e-80 238.0
Smso10g03012 WGDA 1 219 CCAAT-HAP5 Transcription Factor family AT1G08970 60.8 2.03e-83 248.0
Smso9g00243 SST,WGDA 1 282 CCAAT-HAP5 Transcription Factor family AT3G12480 44.178 4.31e-60 191.0
Smso9g01480 SST,WGDA 7 122 CCAAT-HAP5 Transcription Factor family AT5G43250 57.377 2.94e-41 132.0
Smso6g00491 . 36 134 CCAAT-HAP5 Transcription Factor family AT3G12480 30.894 1.18e-09 52.8
Smso5g00414 SST,WGDA 40 203 CCAAT-HAP5 Transcription Factor family AT1G08970 75.449 4.11e-76 229.0
Smso4g01612 ACH,SST 1 230 CCAAT-HAP5 Transcription Factor family AT3G12480 52.743 1.29e-69 216.0
Smso2g02687 . 46 228 CCAAT-HAP5 Transcription Factor family AT5G63470 82.162 9.14e-100 288.0
Smso1g01153 SST 1 140 CCAAT-HAP5 Transcription Factor family AT3G12480 72.143 6.39e-69 214.0
Smso1g02861 SST,WGDA 69 146 CCAAT-HAP5 Transcription Factor family AT1G54830 65.823 8.50e-32 110.0
Smso1g03078 WGDA 12 61 CCAAT-HAP5 Transcription Factor family AT3G12480 82.0 1.85e-22 91.7
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso CBFD_NFYB_HMF 1.3e-19 CL0012 TF NF-YC