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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00023 ATGAGGTTTGGTCTACTCAAATGGGTGCTTGCGGCGGGTGGTTATTCCGTGCTAAAAGAAACAGACCTGGAAAAGGAGAGATACTGCAGGATTCCAAGAGATTCTTCTGTGATAGAATCAACTTCTCGTGCTAGTAGTACAAAAGTTATTGGTCCAAGCACAGGAACTAAAGAATTTGCTGCTACTCGAATCCAAACTGCGTATCGTTCTTATCGGGCAAGAAAAGCGTTACGTTGCTTGAAAGGCACATCAAGATTTCGGGAATTAATCGAGGCTGATGCACTCACAAAACAAGCTTCCTCTGCTCTTAACAAAATACATCTTTGGAGCAAAATACATTTGGAAATTAGAAACCGCCGCCATTGGATGGTGGCGGAAGGCCGGATAAAGCAAAAGAAATTTGAAAATCAAGTCAAGTTTGACTCTAAGCTTCATGAACTTGAGGTATTCAAGGTTTATACACAACTATGGAAATTTCAACAAGAGAATCGACACAGGCTTGTGGAAGCATGGCTTAAGAGATGGGAAATAGTCATATATCTTTCTTTGGTGATTAGATCATATTTGATAAATATCACCAAAAATCCTTGA 591 39.93 MRFGLLKWVLAAGGYSVLKETDLEKERYCRIPRDSSVIESTSRASSTKVIGPSTGTKEFAATRIQTAYRSYRARKALRCLKGTSRFRELIEADALTKQASSALNKIHLWSKIHLEIRNRRHWMVAEGRIKQKKFENQVKFDSKLHELEVFKVYTQLWKFQQENRHRLVEAWLKRWEIVIYLSLVIRSYLINITKNP 196
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00023 196 Pfam Protein SCAI 148 177 IPR022709 GO:0003714(InterPro)|GO:0006351(InterPro)
Smso29g00023 196 ProSiteProfiles IQ motif profile. 57 85 - -
Smso29g00023 196 PANTHER IQ-DOMAIN 5-RELATED 46 177 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00023 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148189 Smso18g01627 Smso29g00023
153417 Smso29g00023 Smso9g00646
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:412472 Smso29g01612 Smso-Chr29:43210603 dispersed
Smso Smso-Chr10:87794515 Smso29g00023 Smso-Chr29:412472 wgd
Smso Smso-Chr16:79691530 Smso29g00023 Smso-Chr29:412472 wgd
Smso Smso-Chr18:74316467 Smso29g00023 Smso-Chr29:412472 wgd
Smso Smso-Chr29:412472 Smso7g00015 Smso-Chr7:199703 wgd
Smso Smso-Chr29:412472 Smso9g00646 Smso-Chr9:15024642 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
SmsoJAKNSE010000034g00177 . 1 353 IQD Protein family AT3G16490 52.394 1.13e-85 262.0
Smso29g00023 ACH 37 141 IQD Protein family AT3G15050 47.321 9.49e-24 93.2
Smso29g00180 . 1 362 IQD Protein family AT5G35670 43.832 8.91e-74 234.0
Smso29g01612 . 1 247 IQD Protein family AT3G15050 45.594 1.68e-63 200.0
Smso29g01854 ACH 1 516 IQD Protein family AT3G59690 41.068 1.68e-96 298.0
Smso29g02138 . 1 450 IQD Protein family AT5G03040 49.567 2.61e-127 377.0
Smso28g00704 SST 1 394 IQD Protein family AT3G49260 39.098 2.45e-60 200.0
Smso28g01050 ACH,SST 183 517 IQD Protein family AT3G59690 53.476 4.95e-112 334.0
Smso27g01433 . 1 404 IQD Protein family AT2G26180 58.124 6.65e-139 407.0
Smso27g01606 ACH,SST 169 484 IQD Protein family AT4G23060 40.0 2.68e-51 177.0
Smso27g02012 SST,WGDA 1 458 IQD Protein family AT5G03040 44.989 3.54e-105 316.0
Smso26g00241 SST 49 364 IQD Protein family AT1G01110 42.388 1.16e-62 204.0
Smso26g00911 SST 1 353 IQD Protein family AT3G16490 35.849 1.04e-23 98.6
Smso26g01021 SST 1 155 IQD Protein family AT5G03960 43.949 9.46e-19 84.3
Smso26g02403 SST,WGDA 1 452 IQD Protein family AT5G03040 38.563 2.47e-84 266.0
Smso26g02593 ACH,SST,WGDA 215 346 IQD Protein family AT1G19870 61.364 1.48e-45 174.0
Smso25g00269 ACH,SST,WGDA 1 480 IQD Protein family AT4G23060 35.597 1.41e-56 191.0
Smso25g01584 ACH,SST,WGDA 1 342 IQD Protein family AT1G74690 39.714 2.13e-51 178.0
Smso25g02017 . 81 435 IQD Protein family AT5G03040 46.703 5.24e-91 280.0
Smso25g02178 . 1 450 IQD Protein family AT5G03040 54.584 3.44e-150 433.0
Smso24g00094 SST 106 332 IQD Protein family AT3G16490 40.928 1.01e-38 140.0
Smso24g00507 ACH,SST,WGDA 44 353 IQD Protein family AT3G16490 46.921 4.45e-63 205.0
Smso24g01052 . 50 333 IQD Protein family AT5G07240 43.168 2.33e-40 144.0
Smso24g01967 SST 60 364 IQD Protein family AT1G01110 42.901 1.94e-59 196.0
Smso23g00008 ACH,SST 1 517 IQD Protein family AT3G59690 40.734 2.45e-100 307.0
Smso23g00247 SST,WGDA 1 458 IQD Protein family AT5G03040 44.915 4.57e-105 318.0
Smso23g00892 SST,WGDA 11 534 IQD Protein family AT4G00820 52.477 9.47e-149 435.0
Smso22g00666 . 695 794 IQD Protein family AT1G19870 53.333 4.95e-24 94.7
Smso22g00667 WGDA 195 570 IQD Protein family AT1G19870 38.144 2.70e-58 205.0
Smso22g00959 SST 1 304 IQD Protein family AT4G14750 33.533 2.69e-34 129.0
Smso22g01334 ACH,SST 102 575 IQD Protein family AT1G74690 39.457 1.51e-72 239.0
Smso22g02518 ACH,SST,WGDA 1 353 IQD Protein family AT3G16490 51.385 3.63e-95 288.0
Smso22g02583 SST 1 402 IQD Protein family AT1G72670 43.387 6.15e-84 261.0
Smso21g00164 ACH,SST,WGDA 215 346 IQD Protein family AT1G19870 61.364 8.53e-46 174.0
Smso21g00821 ACH,SST,WGDA 1 435 IQD Protein family AT5G03040 39.271 6.50e-79 252.0
Smso21g01095 ACH,SST,WGDA 47 333 IQD Protein family AT5G07240 45.37 1.44e-44 156.0
Smso21g01590 ACH,SST,WGDA 1 407 IQD Protein family AT5G13460 43.552 7.01e-92 282.0
Smso20g00422 WGDA 28 364 IQD Protein family AT1G01110 48.378 7.12e-81 247.0
Smso20g01850 . 46 263 IQD Protein family AT2G33990 50.45 8.65e-62 196.0
Smso20g02092 ACH 1 517 IQD Protein family AT3G59690 47.849 9.53e-141 413.0
Smso20g02427 . 106 450 IQD Protein family AT5G03040 54.52 1.44e-115 343.0
Smso19g00019 SST 1 217 IQD Protein family AT3G15050 46.725 5.89e-61 194.0
Smso19g00382 SST,WGDA 1 443 IQD Protein family AT5G13460 43.818 7.08e-96 292.0
Smso18g00320 SST,WGDA 1 375 IQD Protein family AT4G14750 43.188 7.14e-68 216.0
Smso18g00942 . 159 240 IQD Protein family AT5G13460 42.169 7.22e-10 58.2
Smso18g01627 ACH,SST,WGDA 36 231 IQD Protein family AT3G15050 44.019 4.08e-47 156.0
Smso18g02327 ACH,WGDA 167 480 IQD Protein family AT4G23060 41.896 3.33e-48 169.0
Smso18g02546 . 1 388 IQD Protein family AT3G22190 55.419 4.33e-114 339.0
Smso18g02553 . 1 383 IQD Protein family AT3G22190 48.855 2.02e-88 270.0
Smso17g01744 ACH 1 353 IQD Protein family AT3G16490 51.862 3.24e-86 264.0
Smso17g01932 . 1 295 IQD Protein family AT3G52290 39.809 5.22e-54 181.0
Smso16g01725 ACH,SST 61 254 IQD Protein family AT3G15050 49.5 4.00e-63 196.0
Smso16g01863 ACH,SST,WGDA 1 353 IQD Protein family AT3G16490 48.921 3.72e-88 270.0
Smso15g00789 WGDA 195 794 IQD Protein family AT1G19870 37.191 8.74e-90 295.0
Smso15g01074 . 1 271 IQD Protein family AT3G52290 41.667 2.36e-51 174.0
Smso15g02206 ACH,WGDA 1 353 IQD Protein family AT3G16490 48.413 1.29e-83 257.0
Smso14g01147 SST 1 374 IQD Protein family AT4G14750 29.397 1.13e-31 121.0
Smso14g01314 . 5 100 IQD Protein family AT3G51380 53.226 1.31e-30 104.0
Smso14g01584 ACH,SST 99 342 IQD Protein family AT1G74690 49.2 1.33e-56 198.0
Smso14g02478 . 65 563 IQD Protein family AT1G18840 32.54 2.26e-60 206.0
Smso14g02888 ACH,SST,WGDA 1 353 IQD Protein family AT3G16490 51.899 6.73e-93 282.0
Smso14g02952 SST 1 414 IQD Protein family AT1G72670 40.969 1.74e-81 254.0
Smso13g00802 SST 1 155 IQD Protein family AT5G03960 43.949 2.37e-18 83.2
Smso13g00865 SST 1 353 IQD Protein family AT3G16490 42.204 7.26e-54 180.0
Smso13g01284 SST,WGDA 11 534 IQD Protein family AT4G00820 43.273 2.08e-113 343.0
Smso12g00088 ACH,SST 54 324 IQD Protein family AT5G62070 47.917 3.25e-37 135.0
Smso12g00463 . 1 421 IQD Protein family AT3G52290 50.545 1.03e-105 318.0
Smso12g01040 ACH,SST,WGDA 1 575 IQD Protein family AT1G74690 37.585 3.91e-85 274.0
Smso12g03486 SST,WGDA 1 443 IQD Protein family AT5G13460 44.889 1.15e-98 299.0
Smso12g03862 SST 1 237 IQD Protein family AT3G15050 45.238 3.66e-62 195.0
Smso12g04001 ACH,SST,WGDA 208 794 IQD Protein family AT1G19870 35.188 7.93e-78 265.0
Smso11g00354 SST,WGDA 1 794 IQD Protein family AT1G19870 30.392 1.19e-77 261.0
Smso11g02030 ACH,SST,WGDA 1 575 IQD Protein family AT1G74690 37.5 1.05e-84 272.0
Smso11g02629 . 1 421 IQD Protein family AT3G52290 50.218 4.03e-107 322.0
Smso11g03042 ACH,SST 82 346 IQD Protein family AT5G07240 43.06 5.34e-44 154.0
Smso10g01520 ACH,SST 1 374 IQD Protein family AT4G14750 48.241 1.03e-91 279.0
Smso10g03137 ACH,SST,WGDA 1 353 IQD Protein family AT3G16490 46.988 3.18e-78 244.0
Smso10g03268 ACH,SST 61 240 IQD Protein family AT3G15050 51.111 1.12e-61 192.0
Smso9g00140 ACH,WGDA 1 480 IQD Protein family AT4G23060 40.244 2.58e-57 193.0
Smso9g00233 . 1 387 IQD Protein family AT3G22190 55.89 5.58e-111 340.0
Smso9g00646 ACH,SST,WGDA 36 231 IQD Protein family AT3G15050 46.429 1.61e-50 164.0
Smso9g01240 ACH,SST,WGDA 1 371 IQD Protein family AT4G14750 43.959 2.79e-71 225.0
Smso8g02963 ACH,SST,WGDA 1 222 IQD Protein family AT1G14380 41.322 6.63e-41 145.0
Smso8g03285 . 1 435 IQD Protein family AT5G03040 43.459 2.25e-95 292.0
Smso8g03666 . 56 450 IQD Protein family AT5G03040 56.543 1.04e-137 404.0
Smso7g00015 ACH 5 254 IQD Protein family AT3G15050 49.225 1.09e-74 228.0
Smso7g00138 . 1 359 IQD Protein family AT5G35670 45.38 6.13e-74 234.0
Smso7g01694 ACH,SST 1 374 IQD Protein family AT4G14750 48.762 1.29e-93 283.0
Smso6g01006 SST,WGDA 11 534 IQD Protein family AT4G00820 43.796 7.44e-115 350.0
Smso5g00098 SST 1 332 IQD Protein family AT3G16490 41.714 9.93e-40 143.0
Smso5g00519 ACH,SST,WGDA 1 353 IQD Protein family AT3G16490 45.966 1.64e-70 225.0
Smso5g01411 WGDA 1 333 IQD Protein family AT5G07240 40.97 8.24e-42 149.0
Smso5g01677 SST,WGDA 107 379 IQD Protein family AT5G03040 50.542 5.66e-80 254.0
Smso5g01941 ACH,SST,WGDA 215 346 IQD Protein family AT1G19870 62.121 2.09e-46 176.0
Smso4g00156 ACH,SST,WGDA 215 346 IQD Protein family AT1G19870 62.121 1.54e-45 173.0
Smso4g00831 ACH,SST,WGDA 1 435 IQD Protein family AT5G03040 39.712 2.25e-75 242.0
Smso4g01117 ACH,SST,WGDA 47 333 IQD Protein family AT5G07240 45.679 2.03e-44 155.0
Smso4g01604 ACH,SST,WGDA 1 437 IQD Protein family AT5G13460 38.288 6.03e-73 232.0
Smso3g01135 . 130 177 IQD Protein family AT5G03040 54.167 7.37e-10 55.1
Smso3g01989 ACH,SST 169 484 IQD Protein family AT4G23060 39.701 1.61e-53 183.0
Smso3g02409 SST,WGDA 1 458 IQD Protein family AT5G03040 43.71 5.30e-100 303.0
Smso2g00018 ACH,SST,WGDA 1 517 IQD Protein family AT3G59690 41.635 1.57e-103 315.0
Smso2g00383 SST,WGDA 1 458 IQD Protein family AT5G03040 45.243 2.36e-102 313.0
Smso2g01003 ACH 299 575 IQD Protein family AT1G74690 34.507 1.11e-20 92.0
Smso2g01658 SST,WGDA 11 534 IQD Protein family AT4G00820 52.11 9.11e-148 432.0
Smso1g00735 ACH,SST 183 517 IQD Protein family AT3G59690 52.674 5.72e-110 329.0
Smso1g01110 SST 1 469 IQD Protein family AT3G49260 46.45 5.14e-97 297.0
Smso1g02868 ACH,SST,WGDA 1 480 IQD Protein family AT4G23060 37.475 4.20e-55 188.0
Smso1g03061 . 1 388 IQD Protein family AT3G22190 57.143 5.24e-121 356.0