AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00025 ATGGATTCAGGGATATTAGATGCGGATAAAATAAGCAAGGGGAAGAGTCAGTGGGGAGAGGATAGTAAAGTATACAGAAGAAGGTTTAAAACAACCACCGCGAACAACAACGCGGCCGCCACCTCGTCCCCAACCCCTACCGCCACCGTCGCCGCTGCTTCTCTACCTACCACCCCAAATAACGGTCAAACCCTAGCTACCAAAGTTACCGAACATGCTAATTCTGAATTTCAGCATGCTTTATCGCCTGTGGTAGAGGCATCAGATGATCATTCCGTTTGGCAGCCGTCCGGAAACGGGGTGATAAAACCGGTTGTTGTGTTGGTGGATGGTCGGGTCCGGATTAATTTACGAGCTGCCAAGTCTAGGAATGAAATTGTCGAGCTCAAGGAGACGATGAAAGCGGAGCTTGAACAGGTCCGACATCTAGCTCAAAGGCTTGAAGATAAAGAAGCTAAGCTAACTGCGTTTTCAGCCGGTGTTGGTGGTGCTGCCGACGGTGAAGCTTACAATCATTCGCAGTATTCAGGTGATGATGTAGTTGATAGGAGAGCTTTACTTAGAGTTAATTCGGAGATGGGTACTGATTTCATGGACCGTAGAGCCTTGATGAGAATAAATTCTGAAGTGGGATCAGTTACGAATAATGATATAAGGCCTTTTAGGCAGTTAAGTGTATCGGTTGTGAGAAATAGCCATGGAGTTGGGGAGTTTGTGGAGAAAGAGAAGAGAACACCGAAGGCTAATCAGTATTATCGGAATTCTGATTTTCTTCTTGGCAAAGACAGGTTACCCCCTGAAACCAACAAGAGGCGTAAATCTAACAGTGGAAGAAAACATAGCAAAGAAACTGATTACGTCAGGAATCAAGTGTTCAAGAATTGTAATAATTTGCTGCAGAGGTTAATGAAGCACAAATTTGGTTGGGTGTTTAATGAACCCGTTAAGGCTAAACAGTTGGGACTTCATGATTACCATGACATCATCAAACACCCAATGGATTTGGGCACGGTCAAGAGTCGCCTTGCGCAAAACTTCTACAAGTCTTCCATGGAGTTTGCAGATGATGTTAGACTCACATTTCATAACGCCATGACTTATAATCCAAAAGGGCAAGATGTACATGTTATGGCTGAGCAGTTATCAGAGATTTTTGAAGAAAGGTGGGCTGTGATTGAATTAGAATCTAATCCAGATTTGAGATATGGAATGATTTATGATGCGAACACTCCAACTCCCACTTCAAGAAAGGTTCCTCATTTTGCACATGCTTCTTCAAGAATGATGTACAGGTCAGAATCAATGAACTTGCCCGTGATGACTCAGCAAAAACCCTCAAAATTTGTGCCAACAGTTAGGACGCCTGTACCGAAGAAACCTAAAGCCAAGGACCCTAATAAGAGGAACATGACTTATGAAGAGAAACAAAAACTTAGTACAAATCTTCAGAGTTTACCTTCTGAAAAGCTTGACAGCATTGTCCAGATCATCAAAAAGAACACTTCACTTTCTCAGCATGATGATGAGATTGAAGTTGATATTGATAGTGTTGATATTGAAACCCTTTGGGAACTTGATAGGTTTGTCACGAACTATAAAAAGAATTTGAGCAAGCATAAAAGGAAAGCTGCACTTGCTCAACAAGCAAGGATAGAAGCTGGTGATATTAATCGTGCTGTGAACCCGTCAACATCCATTCCGGAGGCCCCCAAAGATAATATAACAAATGAAACGACTCTTGCTAGCACACCTCATAATCAAGGAGGAAGAGGAGATAATGCCAGTAGCTCAAGCAGTTCTAGCAGTGATTCTGGATCCTCTTCTAGCGATTCAGATATTGAAAGACATAGATTAAGATTATCAACAACTGACAAATCTATCTCCTAA 1887 42.34 MDSGILDADKISKGKSQWGEDSKVYRRRFKTTTANNNAAATSSPTPTATVAAASLPTTPNNGQTLATKVTEHANSEFQHALSPVVEASDDHSVWQPSGNGVIKPVVVLVDGRVRINLRAAKSRNEIVELKETMKAELEQVRHLAQRLEDKEAKLTAFSAGVGGAADGEAYNHSQYSGDDVVDRRALLRVNSEMGTDFMDRRALMRINSEVGSVTNNDIRPFRQLSVSVVRNSHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRRKSNSGRKHSKETDYVRNQVFKNCNNLLQRLMKHKFGWVFNEPVKAKQLGLHDYHDIIKHPMDLGTVKSRLAQNFYKSSMEFADDVRLTFHNAMTYNPKGQDVHVMAEQLSEIFEERWAVIELESNPDLRYGMIYDANTPTPTSRKVPHFAHASSRMMYRSESMNLPVMTQQKPSKFVPTVRTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKNLSKHKRKAALAQQARIEAGDINRAVNPSTSIPEAPKDNITNETTLASTPHNQGGRGDNASSSSSSSSDSGSSSSDSDIERHRLRLSTTDKSIS 628
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00025 628 Pfam Bromodomain extra-terminal - transcription regulation 470 530 IPR027353 -
Smso29g00025 628 SUPERFAMILY Bromodomain 271 392 IPR036427 GO:0005515(InterPro)
Smso29g00025 628 MobiDBLite consensus disorder prediction 444 467 - -
Smso29g00025 628 Pfam Bromodomain 295 379 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 Coils Coil 529 549 - -
Smso29g00025 628 ProSiteProfiles NET domain profile. 460 540 IPR027353 -
Smso29g00025 628 CDD Bromo-plant1 291 389 IPR037377 -
Smso29g00025 628 Gene3D - 463 542 IPR038336 -
Smso29g00025 628 ProSiteProfiles Bromodomain profile. 303 375 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 MobiDBLite consensus disorder prediction 259 284 - -
Smso29g00025 628 MobiDBLite consensus disorder prediction 558 608 - -
Smso29g00025 628 Gene3D - 267 398 IPR036427 GO:0005515(InterPro)
Smso29g00025 628 Coils Coil 119 153 - -
Smso29g00025 628 SMART bromo-6 285 394 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 MobiDBLite consensus disorder prediction 263 284 - -
Smso29g00025 628 MobiDBLite consensus disorder prediction 556 628 - -
Smso29g00025 628 PRINTS Bromodomain signature 356 375 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 PRINTS Bromodomain signature 322 338 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 PRINTS Bromodomain signature 306 319 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 PRINTS Bromodomain signature 338 356 IPR001487 GO:0005515(InterPro)
Smso29g00025 628 PANTHER OSJNBA0053K19.4 PROTEIN 33 612 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00025 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:472943 Smso4g01564 Smso-Chr4:22885072 dispersed
Smso Smso-Chr18:74313341 Smso29g00025 Smso-Chr29:472943 wgd
Smso Smso-Chr29:472943 Smso7g00017 Smso-Chr7:241775 wgd