AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso29g00033 | ATGCTACAGATCACTATGCAGGTGTCAACATTTGGGCTCTCACTAGTGAAACTTGATATAAGACAAGAATCTGATCGCCACACAGACGTCCTTGATGCCATCACTCAACATCTGGAAATTGGGTCCTACCGTGAATGGTCTGAAGAAAAACGCCAAGAATGGCTTCTAGCTGAACTCAGTGGAAAACGTCCTCTTTTCGGTTCAGATCTCCCAAAAACTGAGGAAATTAAGGATGTTTTAGACACGTTTAATGTTTTAGCAGAACTCCCATCTGATTGTTTCGGTGCTTACATAATCTCAATGGCCACATCACCTTCTGATGTCCTTGCTGTCGAGCTCCTTCAACGTGAATGCCATGTGAAACAACCGTTACGCGTGGTCCCGCTTTTTGAAAAACTTGCTGACCTGGAGGCCGCCCCTGCCGCCATGGCCCGCCTTTTCTCAGTCGATTGGTACAAAAACCGAATTAACGGGAAACAAGAAGTCATGATTGGGTACTCTGATTCAGGAAAATATGCAGGCCGGTTTTCTGCTGCCTGGCAGCTTTACAAAGCTCAAGAAGAGCTTAAAAATGTGGCAAAGGAGTATGGAGTTAAACTTGTTATGTTTCACGGGCGTGGTGGGACAGTTGGTCGAGGTGGTGGACCCACCCATTTGGCTATCCTGTCCCAACCAGCCGAAACCATTCAGGGGTCGTTAAGAGTCACGGTTCAGGGTGAGGTCATAGAGCAATCTTTTGGTGAGGAACACTTGTGTTTTAGAACACTTCAAAGGTTTTGTGCAGCTACACTTGAGCATGGAATGAACCCACCAATCTCACCAAGGCCCGAGTGGCGTGCACTTATGGACCAGATGGCGATTGTTGCAACCGAACAGTATCGTTCTATTGTGTTCAAGGAACCGCGTTTTGTCGAGTATTTCCGTCTTGCCACACCAGAACTGGAGTACGGGCGTATGAATATTGGAAGCCGGCCATCAAAAAGAAAACCAAGTGGCGGCATAGAATCACTTAGAGCCATTCCATGGATCTTTGCGTGGACCCAAACCAGGTTCCATCTCCCGGTTTGGCTCGGGTTCGGGGCTGCATTCAAACAAGCCATTCAAAAGGACAGCAAGAATTTTCAAATGCTTCAAGAAATGTACAAAACCTGGCCTTTCTTTCGGGTCACCATTGATTTAGTTGAAATGGTGTTTGCTAAAGGAGACCCAGGCATTGCTGCCCTGAATGACAAGCTCCTTGTTTCTGAAGATTTATGGTCCTTTGGAGAATCATTAAGAGCAAACTATGAAGAAACCAAAGATTATCTCCTCAAGATTGCTGGACATAAGGACCTGCTCGAGGGCGATCCCTACTTGAAACAAAGACTTAAATTGCGTGATTCATACATCACAACCTTAAATGTTTGTCAAGCCTATACCCTGAAACGGACCCGTGACCCGAATTATCATGTGACCTTAAGGCCGCATATCTCTAAAGAATATGCTGAGCCAAGCAAACCGGCTGATGAACTGATCCACCTGAACCCAACCAGTGAGTATGCACCGGGTTTGGAGGACACTCTCATCTTGACCATGAAGGGGATTGCTGCTGGAATGCAGAACACTGGTTAA | 1611 | 46.37 | MLQITMQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELSGKRPLFGSDLPKTEEIKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSVDWYKNRINGKQEVMIGYSDSGKYAGRFSAAWQLYKAQEELKNVAKEYGVKLVMFHGRGGTVGRGGGPTHLAILSQPAETIQGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRALMDQMAIVATEQYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKQAIQKDSKNFQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWSFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLKLRDSYITTLNVCQAYTLKRTRDPNYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG | 536 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso29g00033 | 536 | SUPERFAMILY | Phosphoenolpyruvate-pyruvate domain | 3 | 536 | IPR015813 | GO:0003824(InterPro) | |
| Smso29g00033 | 536 | PRINTS | Phosphoenolpyruvate carboxylase signature | 160 | 180 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Smso29g00033 | 536 | PRINTS | Phosphoenolpyruvate carboxylase signature | 334 | 360 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Smso29g00033 | 536 | PRINTS | Phosphoenolpyruvate carboxylase signature | 202 | 231 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Smso29g00033 | 536 | PRINTS | Phosphoenolpyruvate carboxylase signature | 11 | 31 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) | |
| Smso29g00033 | 536 | PANTHER | PHOSPHOENOLPYRUVATE CARBOXYLASE | 4 | 536 | IPR021135 | GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER) | |
| Smso29g00033 | 536 | Pfam | Phosphoenolpyruvate carboxylase | 3 | 536 | IPR021135 | GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso29g00033 | K01595 | phosphoenolpyruvate carboxylase [EC:4.1.1.31] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 147110 | Smso16g01715 | Smso29g00033 | |
| 148183 | Smso18g01616 | Smso29g00033 | |
| 153418 | Smso29g00033 | Smso9g00653 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr29:592207 | Smso4g01976 | Smso-Chr4:30295734 | dispersed | |
| Smso | Smso-Chr29:592207 | Smso29g00034 | Smso-Chr29:622221 | tandem | |
| Smso | Smso-Chr16:79415475 | Smso29g00033 | Smso-Chr29:592207 | wgd | |
| Smso | Smso-Chr18:74251076 | Smso29g00033 | Smso-Chr29:592207 | wgd | |
| Smso | Smso-Chr25:15172012 | Smso29g00033 | Smso-Chr29:592207 | wgd | |
| Smso | Smso-Chr26:31093073 | Smso29g00033 | Smso-Chr29:592207 | wgd | |
| Smso | Smso-Chr29:592207 | Smso7g00027 | Smso-Chr7:358225 | wgd | |
| Smso | Smso-Chr29:592207 | Smso9g00653 | Smso-Chr9:15157907 | wgd |