AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00070 ATGATGATGGTGGCGTGCATCTCATCCTTCTTTCTTTTCTACTTGGTTATGTCTTCTTCACTTCTTCCACTTGCCACCACATTCACTACTCTTCCATCCACAAACACTTTCAAGACTCGAACAAAGCAAACCCAAGGGTTTAGAGTCTCATGCAATAGTACACCAGATGATCAAAATGAAAAGAAACTGATACTCCCTGAGCCCCAAAAGCTTGTCCTCCCAAATGTAGACAGGAGGAACTTGCTTGTGGGGCTTGGCGGCCTCTACACGGCCGCCAACCTCACGTCCTTGCCAGCGGCTGTCGCTGCTCCCATAATAGCTCCAGATATCACCTCTGTATGCAAAGACGCAAAGTCGGGCATTGGGAACACGACAGACGCTGTAAGGACGACGAAATGCTGCCCGCCTAGCATTGGCAAGACTATTAAGCCATGGGTGTTTCCAACAAGAGAAGTTACGAAGTTGCGATGGCCCGCACATCAAGGGACGAAAGAACAGGTGGCGAAATACCGAGCGGCCATCCAAGCGATGAGAGCCCTCCCGGAGGATCACCCGCATAGCTTCAAGAACCAAGCTAAGATTCATTGTGCGTATTGCAACGGCGGTTACACTCAAGTCGAGAGCGGTTTCCCGGACATCGATATTCAGATTCACAACTCGTGGCTCTTCTTTCCTTTCCACCGATGGTATTTATACTTCTATGAAAGAATACTTGGAAAGTTGATTAATGATCCTACTTTCGCCTTACCTTACTGGAAATGGGACGAACCGAAGGGCATGACGATCCCGGAAATGTTTGTACCCGCGGTCGTTGATCGCGCGACAAACCCACTGTTTGACGAGTTCCGGAACACAAGTCATCTCCCACCCGTAATATTGGATCTCGACTACGATGGTTCCGAGAAGGGCATTCCCGCGCCGCAACAGATAGCGTGCAATCTTAGTACGGTGTACCGTGATTTGGTGAGAAACGGTGGTGATACATTAAGCTTCTTTGGGGGCGAATATGTCGCTGGAAATGCCCCGGTCGCCAATGGTGCTAAGTCGGTGGGATCCGTGGAAGCGGGTTCTCACACGGCCGTGCATCGATGGGTAGGCGACCCGACGCAACCGAATAGCGAGGACATGGGTAATTTCTACTCAGCGGGGTATGACCCCGTGTTCTATTGCCACCATGCAAATGTCGACCGTATGTGGAAACTATGGAAGGATTTGGGGATTGCGGGACACGTCGAACCGACTAGTTCCGATTGGTTAAACGCGTCATATGTGTTCTACGACGAGAATCAGGACCTTGTACGTGTCACTAATGAACAATGCGTTAGCTTAAGCAAGCTCAACTACGATTACGTCGAAAACTCGAAGGAAGTATTCCCCTGGCGCAACAGTCGGCCCGCAAAACGTAGCACCAGCTCGCAAGTTGCGTCCACCGTAGAGGTGCCGACGGTGGATAAGGTAACGTTCCCGGTGAGTCTAGATAAGATCCTGAAGGTTCGTGTGAAACGGCCAGCTGTGAACAGGACTGCGGCCGATAAGGCTGCAGCCAACGAGGTTTTGTTGATAAATGGAATAAAGTTCGACAGCAACAAGTTTGTGAAGTTTGATGTGTTTGTGAATGACAAGCTTAAAGACGGTGTTGTGACGACGCCTTGTGATCCTGAATACGCGGGTGGTTTTGCGCAGATTCCACATAGCGATATGGCAAAAATGTCCATGAACAGTGCAGCTAGGTTTGGGCTAACGGAGTTGTTGGAGGACACGACCACCGAAGGTGAAGAGTATGCAACGGTTACATTGGTGCCAAGGACAGGATGCGAAGATCTCACCGTCGGCGAAATCTTAATCCAGTTGGTTCCTCTGTCTTCTTAA 1869 49.97 MMMVACISSFFLFYLVMSSSLLPLATTFTTLPSTNTFKTRTKQTQGFRVSCNSTPDDQNEKKLILPEPQKLVLPNVDRRNLLVGLGGLYTAANLTSLPAAVAAPIIAPDITSVCKDAKSGIGNTTDAVRTTKCCPPSIGKTIKPWVFPTREVTKLRWPAHQGTKEQVAKYRAAIQAMRALPEDHPHSFKNQAKIHCAYCNGGYTQVESGFPDIDIQIHNSWLFFPFHRWYLYFYERILGKLINDPTFALPYWKWDEPKGMTIPEMFVPAVVDRATNPLFDEFRNTSHLPPVILDLDYDGSEKGIPAPQQIACNLSTVYRDLVRNGGDTLSFFGGEYVAGNAPVANGAKSVGSVEAGSHTAVHRWVGDPTQPNSEDMGNFYSAGYDPVFYCHHANVDRMWKLWKDLGIAGHVEPTSSDWLNASYVFYDENQDLVRVTNEQCVSLSKLNYDYVENSKEVFPWRNSRPAKRSTSSQVASTVEVPTVDKVTFPVSLDKILKVRVKRPAVNRTAADKAAANEVLLINGIKFDSNKFVKFDVFVNDKLKDGVVTTPCDPEYAGGFAQIPHSDMAKMSMNSAARFGLTELLEDTTTEGEEYATVTLVPRTGCEDLTVGEILIQLVPLSS 622
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00070 622 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 385 396 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 PRINTS Tyrosinase copper-binding domain signature 357 368 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 PRINTS Tyrosinase copper-binding domain signature 218 235 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 PRINTS Tyrosinase copper-binding domain signature 249 254 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 PRINTS Tyrosinase copper-binding domain signature 384 402 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 Gene3D - 103 456 IPR008922 -
Smso29g00070 622 Pfam Protein of unknown function (DUF-B2219) 488 616 IPR022740 GO:0004097(InterPro)
Smso29g00070 622 SUPERFAMILY Di-copper centre-containing domain 128 450 IPR008922 -
Smso29g00070 622 ProSitePatterns Tyrosinase CuA-binding region signature. 218 235 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 Pfam Common central domain of tyrosinase 186 404 IPR002227 GO:0016491(InterPro)
Smso29g00070 622 PIRSF PPO-plant 1 619 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Smso29g00070 622 PANTHER TYROSINASE FAMILY MEMBER 76 585 IPR050316 -
Smso29g00070 622 Pfam Polyphenol oxidase middle domain 414 465 IPR022739 GO:0004097(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00070 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
424941 Smso13g00202 Smso29g00070
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr1:120581531 Smso29g00070 Smso-Chr29:1441681 dispersed
Smso Smso-Chr26:34223656 Smso29g00070 Smso-Chr29:1441681 dispersed
Smso Smso-Chr29:1441681 Smso7g00061 Smso-Chr7:1134119 dispersed
Smso Smso-Chr29:1441681 Smso29g00072 Smso-Chr29:1478535 proximal
Smso Smso-Chr29:1435335 Smso29g00070 Smso-Chr29:1441681 tandem
Smso Smso-Chr29:1441681 Smso29g00071 Smso-Chr29:1477708 tandem