Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso29g00070 | ATGATGATGGTGGCGTGCATCTCATCCTTCTTTCTTTTCTACTTGGTTATGTCTTCTTCACTTCTTCCACTTGCCACCACATTCACTACTCTTCCATCCACAAACACTTTCAAGACTCGAACAAAGCAAACCCAAGGGTTTAGAGTCTCATGCAATAGTACACCAGATGATCAAAATGAAAAGAAACTGATACTCCCTGAGCCCCAAAAGCTTGTCCTCCCAAATGTAGACAGGAGGAACTTGCTTGTGGGGCTTGGCGGCCTCTACACGGCCGCCAACCTCACGTCCTTGCCAGCGGCTGTCGCTGCTCCCATAATAGCTCCAGATATCACCTCTGTATGCAAAGACGCAAAGTCGGGCATTGGGAACACGACAGACGCTGTAAGGACGACGAAATGCTGCCCGCCTAGCATTGGCAAGACTATTAAGCCATGGGTGTTTCCAACAAGAGAAGTTACGAAGTTGCGATGGCCCGCACATCAAGGGACGAAAGAACAGGTGGCGAAATACCGAGCGGCCATCCAAGCGATGAGAGCCCTCCCGGAGGATCACCCGCATAGCTTCAAGAACCAAGCTAAGATTCATTGTGCGTATTGCAACGGCGGTTACACTCAAGTCGAGAGCGGTTTCCCGGACATCGATATTCAGATTCACAACTCGTGGCTCTTCTTTCCTTTCCACCGATGGTATTTATACTTCTATGAAAGAATACTTGGAAAGTTGATTAATGATCCTACTTTCGCCTTACCTTACTGGAAATGGGACGAACCGAAGGGCATGACGATCCCGGAAATGTTTGTACCCGCGGTCGTTGATCGCGCGACAAACCCACTGTTTGACGAGTTCCGGAACACAAGTCATCTCCCACCCGTAATATTGGATCTCGACTACGATGGTTCCGAGAAGGGCATTCCCGCGCCGCAACAGATAGCGTGCAATCTTAGTACGGTGTACCGTGATTTGGTGAGAAACGGTGGTGATACATTAAGCTTCTTTGGGGGCGAATATGTCGCTGGAAATGCCCCGGTCGCCAATGGTGCTAAGTCGGTGGGATCCGTGGAAGCGGGTTCTCACACGGCCGTGCATCGATGGGTAGGCGACCCGACGCAACCGAATAGCGAGGACATGGGTAATTTCTACTCAGCGGGGTATGACCCCGTGTTCTATTGCCACCATGCAAATGTCGACCGTATGTGGAAACTATGGAAGGATTTGGGGATTGCGGGACACGTCGAACCGACTAGTTCCGATTGGTTAAACGCGTCATATGTGTTCTACGACGAGAATCAGGACCTTGTACGTGTCACTAATGAACAATGCGTTAGCTTAAGCAAGCTCAACTACGATTACGTCGAAAACTCGAAGGAAGTATTCCCCTGGCGCAACAGTCGGCCCGCAAAACGTAGCACCAGCTCGCAAGTTGCGTCCACCGTAGAGGTGCCGACGGTGGATAAGGTAACGTTCCCGGTGAGTCTAGATAAGATCCTGAAGGTTCGTGTGAAACGGCCAGCTGTGAACAGGACTGCGGCCGATAAGGCTGCAGCCAACGAGGTTTTGTTGATAAATGGAATAAAGTTCGACAGCAACAAGTTTGTGAAGTTTGATGTGTTTGTGAATGACAAGCTTAAAGACGGTGTTGTGACGACGCCTTGTGATCCTGAATACGCGGGTGGTTTTGCGCAGATTCCACATAGCGATATGGCAAAAATGTCCATGAACAGTGCAGCTAGGTTTGGGCTAACGGAGTTGTTGGAGGACACGACCACCGAAGGTGAAGAGTATGCAACGGTTACATTGGTGCCAAGGACAGGATGCGAAGATCTCACCGTCGGCGAAATCTTAATCCAGTTGGTTCCTCTGTCTTCTTAA | 1869 | 49.97 | MMMVACISSFFLFYLVMSSSLLPLATTFTTLPSTNTFKTRTKQTQGFRVSCNSTPDDQNEKKLILPEPQKLVLPNVDRRNLLVGLGGLYTAANLTSLPAAVAAPIIAPDITSVCKDAKSGIGNTTDAVRTTKCCPPSIGKTIKPWVFPTREVTKLRWPAHQGTKEQVAKYRAAIQAMRALPEDHPHSFKNQAKIHCAYCNGGYTQVESGFPDIDIQIHNSWLFFPFHRWYLYFYERILGKLINDPTFALPYWKWDEPKGMTIPEMFVPAVVDRATNPLFDEFRNTSHLPPVILDLDYDGSEKGIPAPQQIACNLSTVYRDLVRNGGDTLSFFGGEYVAGNAPVANGAKSVGSVEAGSHTAVHRWVGDPTQPNSEDMGNFYSAGYDPVFYCHHANVDRMWKLWKDLGIAGHVEPTSSDWLNASYVFYDENQDLVRVTNEQCVSLSKLNYDYVENSKEVFPWRNSRPAKRSTSSQVASTVEVPTVDKVTFPVSLDKILKVRVKRPAVNRTAADKAAANEVLLINGIKFDSNKFVKFDVFVNDKLKDGVVTTPCDPEYAGGFAQIPHSDMAKMSMNSAARFGLTELLEDTTTEGEEYATVTLVPRTGCEDLTVGEILIQLVPLSS | 622 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso29g00070 | 622 | ProSitePatterns | Tyrosinase and hemocyanins CuB-binding region signature. | 385 | 396 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | PRINTS | Tyrosinase copper-binding domain signature | 357 | 368 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | PRINTS | Tyrosinase copper-binding domain signature | 218 | 235 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | PRINTS | Tyrosinase copper-binding domain signature | 249 | 254 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | PRINTS | Tyrosinase copper-binding domain signature | 384 | 402 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | Gene3D | - | 103 | 456 | IPR008922 | - | |
| Smso29g00070 | 622 | Pfam | Protein of unknown function (DUF-B2219) | 488 | 616 | IPR022740 | GO:0004097(InterPro) | |
| Smso29g00070 | 622 | SUPERFAMILY | Di-copper centre-containing domain | 128 | 450 | IPR008922 | - | |
| Smso29g00070 | 622 | ProSitePatterns | Tyrosinase CuA-binding region signature. | 218 | 235 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | Pfam | Common central domain of tyrosinase | 186 | 404 | IPR002227 | GO:0016491(InterPro) | |
| Smso29g00070 | 622 | PIRSF | PPO-plant | 1 | 619 | IPR016213 | GO:0004097(InterPro)|GO:0046148(InterPro) | |
| Smso29g00070 | 622 | PANTHER | TYROSINASE FAMILY MEMBER | 76 | 585 | IPR050316 | - | |
| Smso29g00070 | 622 | Pfam | Polyphenol oxidase middle domain | 414 | 465 | IPR022739 | GO:0004097(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso29g00070 | K00422 | polyphenol oxidase [EC:1.10.3.1] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 424941 | Smso13g00202 | Smso29g00070 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr1:120581531 | Smso29g00070 | Smso-Chr29:1441681 | dispersed | |
| Smso | Smso-Chr26:34223656 | Smso29g00070 | Smso-Chr29:1441681 | dispersed | |
| Smso | Smso-Chr29:1441681 | Smso7g00061 | Smso-Chr7:1134119 | dispersed | |
| Smso | Smso-Chr29:1441681 | Smso29g00072 | Smso-Chr29:1478535 | proximal | |
| Smso | Smso-Chr29:1435335 | Smso29g00070 | Smso-Chr29:1441681 | tandem | |
| Smso | Smso-Chr29:1441681 | Smso29g00071 | Smso-Chr29:1477708 | tandem |