AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso29g00093 | ATGCTTCGAGTTTTAAACAAGGCGTCTTTCAACATCGTCGTCGGCCGTCGACGGTTAAGCACCACCGCCACCACCGTACTGAGTTTCGGAGACGGTAGCCACGGTGCGCTTGGCTTACCTACCTCCGTCACCGGAATCGGTTCCGACGCATACGAACCAACTCCAATCCCAACCCTACCCCCCGACGTTTCCAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTCACATCTCAGGGCCACCTCTGGTCCTGGGGCCGGAATGTTGAATATCAACTTGGACGTGCCCTAGATTCCCCTAGAGAAACATGGGTGGAGCCGCAAAGAATAAATGGGTTGAATGGTGTGAGATTGGCATTTGCATCAGGTGTTGTATCTGCAGCCGTTAGAGGTGATGGGTCTTTATGGATTTGGGGGAAATCAAAGCGTGGGCAATTAGGGCTTGGAAATGGGATCACAGAGGCTGTTCTTCCCTCCAGGATTAAAGTTCTTGATAAAGAAGAGATAATTAAGGTCTCATTTGGATGGGGTCATGCTGTTGCACTTACCAAAGATGGAAAGTTGTTTGGTTGGGGTTATTCAGCAGATGGTAGATTAGGAAAGAGAAGAATTATGGAGGCTTCACATCTTGATTCAAAGGCTAGTTTGTCTTCAAGTTTGAAGCTTGAAGATGCCGAGAAATTGGTCTTGGAATCTATGGATAAAGAGAACGATATGCCCATAATCTGGGAACCCTGTTTAATTGATGAACTCAAAGGCGCCGAAGTTGCTGATGTGTCATGTGGGCTCGATCACACCTTGGATGGAACCTTACTCAGTGGTGGAAGCAATGCATATGGTCAATTGGGTAGATCAACACATGATATGGAGTTTCTTCCAGTTGACATAAGCGTCTACCCTGTCTCCATTGCTTCCGGGCTGGGCCATTCTTTAGCAATATGCCAAATCCCATCAGCAGATGGAGGTGGTGGCATTTCAGGCATCTTTTCATGGGGTTGGGGTCAGAATTCTCAGCTCGGGAGGGTGGGTCCCACGAACATCCCATTGCCCGTGGATGGACTTTTAGGGGAAAACCCATTGTCAGTTTCAGGTGGACGCGTGCACTCCATTGCTGTCATGACCAATGGAGATGTTTTCTCATGGGGGTGTGGTAGAAACGGGCGGCTAGGGTTGGGTAGTTCTGCAGATGAGCCTGAACCCATGTTGGTTGAGTTTTCAGAAGGTGCAAATGTTTTGCAAGCTGTCTCAGGGTTTGATCATACTCTAGTCCTAACCGGAAGTTAA | 1284 | 48.99 | MLRVLNKASFNIVVGRRRLSTTATTVLSFGDGSHGALGLPTSVTGIGSDAYEPTPIPTLPPDVSSIAAGHYHSLAVTSQGHLWSWGRNVEYQLGRALDSPRETWVEPQRINGLNGVRLAFASGVVSAAVRGDGSLWIWGKSKRGQLGLGNGITEAVLPSRIKVLDKEEIIKVSFGWGHAVALTKDGKLFGWGYSADGRLGKRRIMEASHLDSKASLSSSLKLEDAEKLVLESMDKENDMPIIWEPCLIDELKGAEVADVSCGLDHTLDGTLLSGGSNAYGQLGRSTHDMEFLPVDISVYPVSIASGLGHSLAICQIPSADGGGGISGIFSWGWGQNSQLGRVGPTNIPLPVDGLLGENPLSVSGGRVHSIAVMTNGDVFSWGCGRNGRLGLGSSADEPEPMLVEFSEGANVLQAVSGFDHTLVLTGS | 427 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso29g00093 | 427 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 24 | 79 | IPR000408 | - | |
| Smso29g00093 | 427 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 22 | 425 | IPR051210 | - | |
| Smso29g00093 | 427 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 133 | 185 | IPR000408 | - | |
| Smso29g00093 | 427 | Gene3D | - | 8 | 226 | IPR009091 | - | |
| Smso29g00093 | 427 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 80 | 140 | IPR000408 | - | |
| Smso29g00093 | 427 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 376 | 427 | IPR000408 | - | |
| Smso29g00093 | 427 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 269 | 316 | IPR000408 | - | |
| Smso29g00093 | 427 | Gene3D | - | 227 | 427 | IPR009091 | - | |
| Smso29g00093 | 427 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 326 | 375 | IPR000408 | - | |
| Smso29g00093 | 427 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 66 | 76 | IPR000408 | - | |
| Smso29g00093 | 427 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 63 | 92 | - | - | |
| Smso29g00093 | 427 | SUPERFAMILY | RCC1-BLIP-II | 23 | 425 | IPR009091 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 133 | 149 | IPR000408 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 172 | 188 | IPR000408 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 371 | 392 | IPR000408 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 63 | 76 | IPR000408 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 25 | 41 | IPR000408 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 188 | 202 | IPR000408 | - | |
| Smso29g00093 | 427 | PRINTS | Chromosome condensation regulator RCC1 signature | 82 | 98 | IPR000408 | - | |
| Smso29g00093 | 427 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 328 | 372 | IPR000408 | - | |
| Smso29g00093 | 427 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 132 | 182 | IPR000408 | - | |
| Smso29g00093 | 427 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 375 | 424 | IPR000408 | - | |
| Smso29g00093 | 427 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 268 | 313 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso29g00093 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr29:1809268 | Smso3g02248 | Smso-Chr3:111948635 | dispersed | |
| Smso | Smso-Chr29:1809268 | Smso7g00086 | Smso-Chr7:1724196 | wgd |