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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00131 ATGGGTTACCATTGTGATCATTGTGGGGAAGCAAGATCAATGGCGTATTGTAGATCAGATGCAGCCTACTTATGTTTATCGTGTGATCGTATTGTTCATTCTGCAAATGCATTATCAAAACGCCATTCAAGAACACTTGTATGTGATAGATGCAATTCACAACCCGCATTGGTTAGATGTATAGAAGAAAAAATCTCACTTTGTCAACAGTGTGATTGGGTCAGTCATAACGGGTCAACAAAACACAGTATACAGACATTAAATTGCTATTCGGGTTGCCCTTCAGCTGTACAACTTTCCTCAATTTGGTCATTTATGTCAGATTCTGATTCGGGCTTTGTTAATGGATCTACTTGTGAGCAAGAAATGGGTTCAATGAGCATTGCAGATAACAGCCAAGGACCTTTTAGTAGCAACAATAATGATAATAACAATCAAGATTTACTTGCAAGTGGAAATAATTCAAATGTTTGGACTGGCACCTCGGGTATTCATGTCGATAGTAAGCCACAAATTATAGTTCAACAAGTTGGGCCCGTATGTTCTTCTGCGGTTAAGATATCACATTCGGGCCCAAAAGACCCTGAACCAGTTCTTGGTGATGATGGATTTTATGTTGACTTTAGTATGGATGAAGTTGACTTGAGCATTGAGAATTATGAAGAACTCTTTGGAATAGGCCATAATGATCCTGAACATCTTTTTGCAAAAGATGGGATTGATAGTTTGTTTGGTGGTGCTGAATCTTCATATGCTGGAAAGGAATCTTCAACAGGACATGCAAATCAAGCACAACCCGCGTGCAGTAATGCAGCATCGGCTGACTCATTAATTAGCTCTAAAACAGAACCGAACCCTTGTTATGCAAGGCAACACTCGAATATCTCATTCTCAAGCCTCACTGGGGAAAGCAGTGCTGGTGAATATCAAGACTGTGGGGTTTTGTCAAGGCTTCTATTGGGCGAGCCGCCATGGTACAACTCGGGCCCTGGACCTGGCCCGGCCCGTGATCAAACAACCACCCCTTCTGGTAGCAGAAGTGATGCGGTCCTACGTTACCAGGAAAAAAAGAAAATGCGAAAATTTGACAAGAGAGTAAGATATGCTACACGAAAGGAACGGGCGGATGTAAGAAAGCGAGTGAAAGGGCGGTTTGTGAAGGTGGGTGATGCTTATGATTATGACCCGTTGAGTCAAACCCGAAGCTTTTAG 1212 42.24 MGYHCDHCGEARSMAYCRSDAAYLCLSCDRIVHSANALSKRHSRTLVCDRCNSQPALVRCIEEKISLCQQCDWVSHNGSTKHSIQTLNCYSGCPSAVQLSSIWSFMSDSDSGFVNGSTCEQEMGSMSIADNSQGPFSSNNNDNNNQDLLASGNNSNVWTGTSGIHVDSKPQIIVQQVGPVCSSAVKISHSGPKDPEPVLGDDGFYVDFSMDEVDLSIENYEELFGIGHNDPEHLFAKDGIDSLFGGAESSYAGKESSTGHANQAQPACSNAASADSLISSKTEPNPCYARQHSNISFSSLTGESSAGEYQDCGVLSRLLLGEPPWYNSGPGPGPARDQTTTPSGSRSDAVLRYQEKKKMRKFDKRVRYATRKERADVRKRVKGRFVKVGDAYDYDPLSQTRSF 403
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00131 403 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Smso29g00131 403 MobiDBLite consensus disorder prediction 323 349 - -
Smso29g00131 403 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 392 - -
Smso29g00131 403 MobiDBLite consensus disorder prediction 129 152 - -
Smso29g00131 403 MobiDBLite consensus disorder prediction 333 348 - -
Smso29g00131 403 CDD Bbox1-BBX-like 5 47 IPR049808 -
Smso29g00131 403 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
Smso29g00131 403 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515(InterPro)
Smso29g00131 403 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Smso29g00131 403 SMART bboxneu5 48 87 IPR000315 GO:0008270(InterPro)
Smso29g00131 403 Pfam CCT motif 346 387 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00131 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
148161 Smso18g01557 Smso29g00131
431849 Smso26g01863 Smso29g00131
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr24:12474044 Smso29g00131 Smso-Chr29:2213539 dispersed
Smso Smso-Chr25:16102238 Smso29g00131 Smso-Chr29:2213539 dispersed
Smso Smso-Chr29:2213539 Smso5g00684 Smso-Chr5:14319486 dispersed
Smso Smso-Chr18:73543987 Smso29g00131 Smso-Chr29:2213539 wgd
Smso Smso-Chr26:35925772 Smso29g00131 Smso-Chr29:2213539 wgd
Smso Smso-Chr29:2213539 Smso7g00097 Smso-Chr7:1841477 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g00131 ACH,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 51.914 1.13e-131 381.0
Smso29g00265 WGDA 1 215 C2C2-CO-like Transcription Factor family AT1G75540 53.023 9.71e-66 203.0
Smso29g00682 SST 252 319 C2C2-CO-like Transcription Factor family AT3G02380 39.706 1.90e-09 55.5
Smso28g01069 SST 315 388 C2C2-CO-like Transcription Factor family AT5G24930 40.541 3.71e-11 62.4
Smso27g00684 . 253 317 C2C2-CO-like Transcription Factor family AT3G02380 44.615 6.65e-10 59.7
Smso27g00728 ACH,SST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 44.023 7.22e-76 233.0
Smso27g01653 ACH,SST 285 329 C2C2-CO-like Transcription Factor family AT5G57660 48.889 1.70e-06 47.4
Smso26g00142 . 13 114 C2C2-CO-like Transcription Factor family AT1G75540 69.231 3.76e-43 145.0
Smso26g01863 ACH,WGDA 180 372 C2C2-CO-like Transcription Factor family AT3G07650 56.039 2.17e-66 209.0
Smso26g02005 WGDA 1 206 C2C2-CO-like Transcription Factor family AT1G75540 50.952 1.41e-62 195.0
Smso25g00285 ACH,SST,WGDA 257 363 C2C2-CO-like Transcription Factor family AT5G15840 33.645 6.19e-14 69.7
Smso25g00499 WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.354 6.76e-96 290.0
Smso25g00690 SST,WGDA 3 96 C2C2-CO-like Transcription Factor family AT4G27310 57.447 2.42e-31 109.0
Smso25g00756 SST,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.751 1.63e-95 282.0
Smso25g00779 SST,WGDA 180 372 C2C2-CO-like Transcription Factor family AT3G07650 54.46 8.51e-66 205.0
Smso25g01672 ACH,SST 237 332 C2C2-CO-like Transcription Factor family AT5G15850 40.952 2.20e-10 58.5
Smso24g00286 SST 5 355 C2C2-CO-like Transcription Factor family AT5G57660 45.758 3.16e-97 293.0
Smso24g00658 ACH,SST 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.438 3.19e-130 379.0
Smso24g01756 SST 289 400 C2C2-CO-like Transcription Factor family AT1G68520 41.259 3.99e-21 90.5
Smso24g02604 ACH,SST,WGDA 3 105 C2C2-CO-like Transcription Factor family AT4G27310 49.038 4.57e-30 110.0
Smso23g00012 ACH,SST 315 389 C2C2-CO-like Transcription Factor family AT5G24930 40.0 1.07e-11 61.2
Smso23g00911 WGDA 4 127 C2C2-CO-like Transcription Factor family AT5G54470 52.308 6.75e-32 113.0
Smso23g01309 ACH,SST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 40.816 1.08e-65 206.0
Smso23g01319 WGDA 137 347 C2C2-CO-like Transcription Factor family AT5G15840 30.806 1.76e-14 70.1
Smso22g01450 ACH,SST 14 347 C2C2-CO-like Transcription Factor family AT3G02380 49.861 1.07e-112 330.0
Smso22g02031 SST 1 108 C2C2-CO-like Transcription Factor family AT1G75540 48.649 3.00e-27 102.0
Smso22g02033 ACH 1 276 C2C2-CO-like Transcription Factor family AT1G75540 37.631 2.73e-41 143.0
Smso21g00405 ACH,SST 10 293 C2C2-CO-like Transcription Factor family AT1G68190 35.329 3.04e-54 182.0
Smso21g02237 SST,WGDA 26 303 C2C2-CO-like Transcription Factor family AT2G47890 36.893 4.83e-50 166.0
Smso21g02683 . 282 337 C2C2-CO-like Transcription Factor family AT5G15850 44.643 1.26e-08 52.4
Smso19g01386 ACH,SST 3 99 C2C2-CO-like Transcription Factor family AT4G27310 54.082 1.75e-28 105.0
Smso19g01447 SST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 57.207 1.04e-80 237.0
Smso18g00589 ACH,SST,WGDA 288 399 C2C2-CO-like Transcription Factor family AT1G68520 44.248 2.67e-20 90.1
Smso18g01557 ACH,WGDA 14 373 C2C2-CO-like Transcription Factor family AT5G48250 54.569 2.77e-127 369.0
Smso18g01594 SST,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.733 4.29e-97 286.0
Smso18g01704 SST,WGDA 3 223 C2C2-CO-like Transcription Factor family AT4G27310 37.179 2.54e-32 115.0
Smso18g01968 SST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 48.705 1.23e-93 284.0
Smso18g02289 ACH,SST,WGDA 176 273 C2C2-CO-like Transcription Factor family AT2G24790 42.857 1.01e-12 65.9
Smso17g00204 SST,WGDA 7 328 C2C2-CO-like Transcription Factor family AT2G47890 43.85 1.34e-94 284.0
Smso17g00606 SST 185 270 C2C2-CO-like Transcription Factor family AT2G24790 38.372 1.23e-10 58.5
Smso16g00021 . 1 206 C2C2-CO-like Transcription Factor family AT3G21150 26.147 2.87e-14 66.6
Smso16g01681 SST 46 224 C2C2-CO-like Transcription Factor family AT1G75540 39.247 3.98e-25 99.8
Smso15g00639 . 193 319 C2C2-CO-like Transcription Factor family AT3G02380 31.496 2.34e-11 63.2
Smso15g01410 . 1 307 C2C2-CO-like Transcription Factor family AT3G02380 44.345 3.89e-82 250.0
Smso14g01384 . 166 252 C2C2-CO-like Transcription Factor family AT1G78600 47.253 2.41e-11 57.0
Smso14g01737 SST 14 347 C2C2-CO-like Transcription Factor family AT3G02380 49.307 3.15e-111 327.0
Smso14g02373 ACH,SST 1 318 C2C2-CO-like Transcription Factor family AT1G75540 46.884 4.11e-72 224.0
Smso12g01095 SST 11 347 C2C2-CO-like Transcription Factor family AT3G02380 51.752 6.79e-123 357.0
Smso12g02444 SST 3 98 C2C2-CO-like Transcription Factor family AT4G27310 54.639 3.16e-29 108.0
Smso12g02490 SST 1 183 C2C2-CO-like Transcription Factor family AT4G38960 57.333 1.54e-82 242.0
Smso11g00967 . 270 386 C2C2-CO-like Transcription Factor family AT5G24930 34.454 6.74e-12 64.7
Smso11g01970 ACH,SST 11 347 C2C2-CO-like Transcription Factor family AT3G02380 53.1 2.01e-123 358.0
Smso10g03305 ACH,SST 1 224 C2C2-CO-like Transcription Factor family AT1G75540 48.673 1.09e-58 187.0
Smso9g00258 SST,WGDA 282 333 C2C2-CO-like Transcription Factor family AT5G15850 51.923 1.69e-12 65.9
Smso9g00430 SST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.096 5.18e-99 297.0
Smso9g00592 SST,WGDA 3 223 C2C2-CO-like Transcription Factor family AT4G27310 36.555 8.60e-33 117.0
Smso9g00668 ACH,SST,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 51.133 4.28e-94 278.0
Smso9g01366 ACH,SST,WGDA 288 399 C2C2-CO-like Transcription Factor family AT1G68520 44.643 3.47e-21 92.8
Smso8g00231 SST,WGDA 7 328 C2C2-CO-like Transcription Factor family AT2G47890 43.869 1.99e-94 283.0
Smso8g00645 SST 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 4.03e-11 60.1
Smso8g03060 ACH,SST 220 332 C2C2-CO-like Transcription Factor family AT5G15850 36.975 5.59e-10 57.4
Smso7g00097 ACH,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 51.435 9.72e-129 374.0
Smso7g00525 SST 237 319 C2C2-CO-like Transcription Factor family AT3G02380 37.349 9.45e-10 56.2
Smso6g00339 ACH,SST,WGDA 3 105 C2C2-CO-like Transcription Factor family AT4G27310 50.0 5.47e-30 109.0
Smso6g01252 SST 289 400 C2C2-CO-like Transcription Factor family AT1G68520 40.559 3.93e-20 88.6
Smso5g00296 SST 1 355 C2C2-CO-like Transcription Factor family AT5G57660 45.802 2.01e-96 291.0
Smso5g00684 SST 14 339 C2C2-CO-like Transcription Factor family AT5G48250 50.602 8.35e-99 295.0
Smso5g01250 . 259 331 C2C2-CO-like Transcription Factor family AT5G57660 45.205 2.97e-11 61.2
Smso4g00376 ACH,SST 10 293 C2C2-CO-like Transcription Factor family AT1G68190 36.223 5.38e-58 192.0
Smso4g01183 ACH,SST 257 329 C2C2-CO-like Transcription Factor family AT5G57660 42.857 3.77e-10 57.4
Smso4g02424 SST,WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 46.832 2.97e-96 288.0
Smso3g00733 SST,WGDA 127 320 C2C2-CO-like Transcription Factor family AT3G02380 29.353 1.03e-14 70.9
Smso3g00775 ACH,SST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 44.898 1.53e-77 238.0
Smso3g02036 ACH,SST 172 319 C2C2-CO-like Transcription Factor family AT3G02380 27.778 9.73e-07 48.1
Smso2g01693 WGDA 4 194 C2C2-CO-like Transcription Factor family AT5G54470 41.624 9.11e-32 112.0
Smso2g02228 . 166 398 C2C2-CO-like Transcription Factor family AT2G33500 34.909 7.06e-30 115.0
Smso2g02567 ACH,SST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 39.233 5.51e-62 197.0
Smso1g00708 ACH,SST 315 388 C2C2-CO-like Transcription Factor family AT5G24930 35.294 1.96e-08 54.3
Smso1g02163 SST,WGDA 14 348 C2C2-CO-like Transcription Factor family AT5G48250 52.646 1.22e-108 322.0
Smso1g02206 SST,WGDA 1 299 C2C2-CO-like Transcription Factor family AT1G78600 51.78 6.11e-94 278.0
Smso1g02300 SST,WGDA 3 96 C2C2-CO-like Transcription Factor family AT4G27310 52.128 5.33e-28 100.0
Smso1g02849 ACH,SST,WGDA 235 340 C2C2-CO-like Transcription Factor family AT5G15850 40.187 2.73e-13 67.4
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Smso CCT 4.3e-15 CL0281 TF C2C2-CO-like