Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso29g00147 | ATGTCTAGAGGTTATATTGATAGAGCCATGGCTTCTTACAAGAAACCACGCATTAGAGACGGAGCGGTTCGTAGGTTTCTTTTTGTAGTGTGTTTAACTCTGGCTGGGGTGCTTTTGTTATTGTTTCTTGTTGGGATGAATTCAAACAATGAGATTGAAAGTAGTGAGTTTAGCTCTAACATTGTTGTTGGTTTGATCAAGAGTATCAAGCTTCCTAAACATAATCACTTGTCGAAAATGTTGGAGGATAGGAACCAGTTGCCTCCAAGAAACATGGATTTGTATCCGATTCTAGCTAAAGACCGTATAGTAATCGTTCTTTATGTTCACAATCGTCCCCAGTATCTCAAAGTAGTGGTGGATAGCCTTTCTCGTGTGTCGGGTATTAATGAAACGTTGTTAATTGTAAGTCATGATGGATACTTTGAAGAAATGAACAAGATTGTTGAGGGCATTAGGTTTTGTCAAGTGAAACAGATATTCAACCCCTTTTCGCCTCATATATTTCCCAATAGTTTTCCTGGTGTATCCCCTAATGATTGCAAAGAGAAAGATAACCCGATTGAGAAAAAGTGTGAAGGGAGTACCGATCAATATGGAAATCATCGGTCACCAAAGATTGTGTCTTTAAAACATCATTGGTGGTGGATGATGAACACGGTTTGGGACGGGTTAAAAGAGACAACGGGCCATTCGGGTGATATCCTTTTCATAGAAGAAGATCATTTCATTTTCCCAAACGCGTATCAGAATTTGAAGATATTAACGGAATTAAAACCCATAAAGTGTCCCGACTGTTATGCTGCAAATCTTGCTCCGAGTAATGTGAAATCCAGGGGTGAAAATTGGGATAATTTGATAGCAGAAAGAATGGGTAACATTGGCTACACATTCAATCGAACGGTATGGAGGAAAATACATAGAAAAGCTACAGAATTTTGCTTCTTTGATGATTATAACTGGGATATAACAATGTGGGTGACTGTTTATCCTTCATTTGGTGGTGCGGTTTACTCTCTGCGTGGACCTAGGGCTAGCGCGGTTCACTTTGGGAAATGTGGGTTGCACCAGGGTCAAGGGGAAAACACTGCTTGTGTGGACAACGGTGTGGTGAATATCGGCACCGAGGAGATTGACAAGGTTGTTAATATCAAACCCGAGTGGGGCGTGCATGTGATAAGCAATCAAGACGGGTATCAAGCCGGATTTAGAGGGTGGGGTGGGTGGGGAGATAAAAGAGATCATCAATTGTGTTTGGATTTTGCTCAAATGTATCACGTGAGGAGTAAAACGTCTTAG | 1299 | 41.03 | MSRGYIDRAMASYKKPRIRDGAVRRFLFVVCLTLAGVLLLLFLVGMNSNNEIESSEFSSNIVVGLIKSIKLPKHNHLSKMLEDRNQLPPRNMDLYPILAKDRIVIVLYVHNRPQYLKVVVDSLSRVSGINETLLIVSHDGYFEEMNKIVEGIRFCQVKQIFNPFSPHIFPNSFPGVSPNDCKEKDNPIEKKCEGSTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETTGHSGDILFIEEDHFIFPNAYQNLKILTELKPIKCPDCYAANLAPSNVKSRGENWDNLIAERMGNIGYTFNRTVWRKIHRKATEFCFFDDYNWDITMWVTVYPSFGGAVYSLRGPRASAVHFGKCGLHQGQGENTACVDNGVVNIGTEEIDKVVNIKPEWGVHVISNQDGYQAGFRGWGGWGDKRDHQLCLDFAQMYHVRSKTS | 432 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso29g00147 | 432 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 101 | 426 | IPR029044 | - | |
| Smso29g00147 | 432 | PANTHER | BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II | 23 | 427 | IPR007754 | GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(PANTHER)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro) | |
| Smso29g00147 | 432 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 102 | 362 | IPR029044 | - | |
| Smso29g00147 | 432 | Pfam | N-acetylglucosaminyltransferase II (MGAT2) | 89 | 418 | IPR007754 | GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso29g00147 | K00736 | alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 424923 | Smso13g00149 | Smso29g00147 | |
| 431857 | Smso26g01880 | Smso29g00147 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Smso | Smso-Chr13:8371795 | Smso29g00147 | Smso-Chr29:2331057 | wgd | |
| Smso | Smso-Chr26:36415950 | Smso29g00147 | Smso-Chr29:2331057 | wgd | |
| Smso | Smso-Chr29:2331057 | Smso7g00117 | Smso-Chr7:1986345 | wgd |