AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00147 ATGTCTAGAGGTTATATTGATAGAGCCATGGCTTCTTACAAGAAACCACGCATTAGAGACGGAGCGGTTCGTAGGTTTCTTTTTGTAGTGTGTTTAACTCTGGCTGGGGTGCTTTTGTTATTGTTTCTTGTTGGGATGAATTCAAACAATGAGATTGAAAGTAGTGAGTTTAGCTCTAACATTGTTGTTGGTTTGATCAAGAGTATCAAGCTTCCTAAACATAATCACTTGTCGAAAATGTTGGAGGATAGGAACCAGTTGCCTCCAAGAAACATGGATTTGTATCCGATTCTAGCTAAAGACCGTATAGTAATCGTTCTTTATGTTCACAATCGTCCCCAGTATCTCAAAGTAGTGGTGGATAGCCTTTCTCGTGTGTCGGGTATTAATGAAACGTTGTTAATTGTAAGTCATGATGGATACTTTGAAGAAATGAACAAGATTGTTGAGGGCATTAGGTTTTGTCAAGTGAAACAGATATTCAACCCCTTTTCGCCTCATATATTTCCCAATAGTTTTCCTGGTGTATCCCCTAATGATTGCAAAGAGAAAGATAACCCGATTGAGAAAAAGTGTGAAGGGAGTACCGATCAATATGGAAATCATCGGTCACCAAAGATTGTGTCTTTAAAACATCATTGGTGGTGGATGATGAACACGGTTTGGGACGGGTTAAAAGAGACAACGGGCCATTCGGGTGATATCCTTTTCATAGAAGAAGATCATTTCATTTTCCCAAACGCGTATCAGAATTTGAAGATATTAACGGAATTAAAACCCATAAAGTGTCCCGACTGTTATGCTGCAAATCTTGCTCCGAGTAATGTGAAATCCAGGGGTGAAAATTGGGATAATTTGATAGCAGAAAGAATGGGTAACATTGGCTACACATTCAATCGAACGGTATGGAGGAAAATACATAGAAAAGCTACAGAATTTTGCTTCTTTGATGATTATAACTGGGATATAACAATGTGGGTGACTGTTTATCCTTCATTTGGTGGTGCGGTTTACTCTCTGCGTGGACCTAGGGCTAGCGCGGTTCACTTTGGGAAATGTGGGTTGCACCAGGGTCAAGGGGAAAACACTGCTTGTGTGGACAACGGTGTGGTGAATATCGGCACCGAGGAGATTGACAAGGTTGTTAATATCAAACCCGAGTGGGGCGTGCATGTGATAAGCAATCAAGACGGGTATCAAGCCGGATTTAGAGGGTGGGGTGGGTGGGGAGATAAAAGAGATCATCAATTGTGTTTGGATTTTGCTCAAATGTATCACGTGAGGAGTAAAACGTCTTAG 1299 41.03 MSRGYIDRAMASYKKPRIRDGAVRRFLFVVCLTLAGVLLLLFLVGMNSNNEIESSEFSSNIVVGLIKSIKLPKHNHLSKMLEDRNQLPPRNMDLYPILAKDRIVIVLYVHNRPQYLKVVVDSLSRVSGINETLLIVSHDGYFEEMNKIVEGIRFCQVKQIFNPFSPHIFPNSFPGVSPNDCKEKDNPIEKKCEGSTDQYGNHRSPKIVSLKHHWWWMMNTVWDGLKETTGHSGDILFIEEDHFIFPNAYQNLKILTELKPIKCPDCYAANLAPSNVKSRGENWDNLIAERMGNIGYTFNRTVWRKIHRKATEFCFFDDYNWDITMWVTVYPSFGGAVYSLRGPRASAVHFGKCGLHQGQGENTACVDNGVVNIGTEEIDKVVNIKPEWGVHVISNQDGYQAGFRGWGGWGDKRDHQLCLDFAQMYHVRSKTS 432
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00147 432 SUPERFAMILY Nucleotide-diphospho-sugar transferases 101 426 IPR029044 -
Smso29g00147 432 PANTHER BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II 23 427 IPR007754 GO:0000139(PANTHER)|GO:0005795(InterPro)|GO:0006487(PANTHER)|GO:0008455(PANTHER)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
Smso29g00147 432 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 102 362 IPR029044 -
Smso29g00147 432 Pfam N-acetylglucosaminyltransferase II (MGAT2) 89 418 IPR007754 GO:0005795(InterPro)|GO:0008455(InterPro)|GO:0009312(InterPro)|GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00147 K00736 alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [EC:2.4.1.143]
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Event-related genes

Select Gene_1 Gene_2 Event_name
424923 Smso13g00149 Smso29g00147
431857 Smso26g01880 Smso29g00147
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr13:8371795 Smso29g00147 Smso-Chr29:2331057 wgd
Smso Smso-Chr26:36415950 Smso29g00147 Smso-Chr29:2331057 wgd
Smso Smso-Chr29:2331057 Smso7g00117 Smso-Chr7:1986345 wgd