AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00156 ATGTTGCTATCCCCGGGCCACTCCCCCCGCCGTCTCTCATCTCCGTCGCCATCGCCGTCGGTCTCTGAAACACCTGGTGTTCACCAAACCCCTGGATCCTCCAATTCCTTAATCGCATCAACCCCCCAAAACCCTAGAAAACGAAATTCGTCAACCGTCCTCGATGAGGACACGTACGTTGCCGCAATCGAGAAGATTATCCAACGAGACTTCTTCCCTGACATCCCTAAGCTCCGAGACCGACTCGACTGGCTGGAAGCCACCCGCTCCGGCGATCCGATGCTAATCCGTGATGCGCAGTTGAAGATCATCGAACGGCGATCTGGAAAAGCTTCTGTTACCGATACGGAAGGTAAAATTCGCACGCCTGGTTCTACTTTTTTTAGAAACACTACACCGTTGGAGCTCGATAGAACTCCCGGTACCGATAGGTTTGCGAAAGAGGAGTTATTTAATGCGGTTAAGGAATCGATTAAGAACGATGACGACGGGGCTGTGGATACGAATTCGTTGTCACTTGATGAGTTTTTTAGGAAGTATACTAGCGAAGATAATGCTAGTTTTTCGAAACTTATTGAGAAAGTTAATAAAAACAAGAGGTTAAGGTATGAGTTCTTGTTAGAAGGTGAGAATCGTGATAAGGGATTGATAGAAGGTTCGAAAATGGATAGGATTACGGACGGTTATGGGACGTCTGATCAGCCTTTAGCTACGTTAGACAGTTGGAAATATACTGCGAAGAATTTGTTAATGTATCATCCGGCTGATCGAGGTGAAGCACCGTTAACTCAGGAAGAGCGGGATAATCGGTTGAAACAGATGATGAAGGAAATTAGTAAAACGAACACGCGCTTTCATGGGAAGATGGTGGATTATAGCTCTAAAGAAGATGATGAAGTGGCTGTTCTTTACAATCCTGTTGCTGGTGGTACACCGGTTCCATGGTCAATGTCGGATAGAGATGGGGATAAGATGAAGAAGTATGATTTAGAGGATTTAAGAAAGAGCCCGAATCTGTTTTATGTTGAATCTAGTAAGAAAGCGGATAACGGGTACAGCTTTGTTAAAACTCCATCTCCTGCGCCTGGTGTGGATGAATCACCCTTCATTACATGGGGAGAGATTGAAGGCACCCCGTTGAGATTGGAACCCGAAGACACCCCAGTTGACATTGGTGGCAGTGGAAACGGGCCTCAGTTCAATATCCCTCTTCCGCCTTCAAGAGATGTGAAGGCTCATTCTTTATCTCGAGAAGCTGCCAGGAAAATTAGGGACCGTTCTAGAATGTTTCAGAAACCGCCACTGCCGTCTGGTGGTGCTAGTCCTGGTGGCCGGATACTTTCCCCTGCTGCACAAAAGTTTGTCAGAAATGCGATTGCTAAGTCTTCTCAGTCTGCTAGTGTTGATGAATCGCTTCGGGCTAGTTATCGCGGGTCGAGTCCTGGGTTCTCTACACCAAAATCTGGAAGAAGTGCATCCAAGTTGGGGAGAGATGGTAGCTTGAGTTCAACAAGATCACCTTCTGTTAGGGATGGCTCTAATCCTCCTTGGTAA 1554 46.78 MLLSPGHSPRRLSSPSPSPSVSETPGVHQTPGSSNSLIASTPQNPRKRNSSTVLDEDTYVAAIEKIIQRDFFPDIPKLRDRLDWLEATRSGDPMLIRDAQLKIIERRSGKASVTDTEGKIRTPGSTFFRNTTPLELDRTPGTDRFAKEELFNAVKESIKNDDDGAVDTNSLSLDEFFRKYTSEDNASFSKLIEKVNKNKRLRYEFLLEGENRDKGLIEGSKMDRITDGYGTSDQPLATLDSWKYTAKNLLMYHPADRGEAPLTQEERDNRLKQMMKEISKTNTRFHGKMVDYSSKEDDEVAVLYNPVAGGTPVPWSMSDRDGDKMKKYDLEDLRKSPNLFYVESSKKADNGYSFVKTPSPAPGVDESPFITWGEIEGTPLRLEPEDTPVDIGGSGNGPQFNIPLPPSRDVKAHSLSREAARKIRDRSRMFQKPPLPSGGASPGGRILSPAAQKFVRNAIAKSSQSASVDESLRASYRGSSPGFSTPKSGRSASKLGRDGSLSSTRSPSVRDGSNPPW 517
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00156 517 MobiDBLite consensus disorder prediction 392 517 - -
Smso29g00156 517 MobiDBLite consensus disorder prediction 1 52 - -
Smso29g00156 517 Pfam Nuclear protein Es2 51 454 IPR019148 -
Smso29g00156 517 MobiDBLite consensus disorder prediction 411 429 - -
Smso29g00156 517 PANTHER ES-2 PROTEIN - RELATED 11 501 IPR019148 GO:0071013(PANTHER)
Smso29g00156 517 MobiDBLite consensus disorder prediction 9 49 - -
Smso29g00156 517 MobiDBLite consensus disorder prediction 457 511 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00156 K13118 protein DGCR14
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Event-related genes

Select Gene_1 Gene_2 Event_name
424919 Smso13g00136 Smso29g00156
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr19:23957782 Smso29g00156 Smso-Chr29:2464617 dispersed
Smso Smso-Chr26:36536040 Smso29g00156 Smso-Chr29:2464617 transposed
Smso Smso-Chr13:7567619 Smso29g00156 Smso-Chr29:2464617 wgd
Smso Smso-Chr29:2464617 Smso7g00125 Smso-Chr7:2128471 wgd