AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00158 ATGTTTCATCACACCCCACTTCCCCAAATTCAAAAGATGGCTCTGACACCAACTGTCCATCACGGTGATCAAGATCAGATCGCTAAACTTGTTCGTCCGTCAGGTGAAATTCATGTTATCGTGGGCCCAATGTTTGCTGGCAAAACAACAGCTCTCCTTCGAAGGATCAAATCTGAAAACACTAACGGCAGGAATATAGCAATGATAAAGTCAAACAAGGATACCAGATATGCAATAGATTCAGTTGTGACCCATGATGGAACAAAGTATCCATGTTGGGCTCTTCCTGATCTTTTGTCTTTCAAACAAAAACTTGGAGAAGAAGCATATGACAAGCTTGATGTTATTGGGATTGATGAAGCACAATTCTTTGATGATCTTTATGATTTTTGCTGTAAAGCTGCTGATCATGATGGAAAGACTGTAATAGTTGCTGGTCTTGATGGTGATTACTTAAGAAGGAACTTTGGACCAGTGCTTGATATAGTTCCCCTTGCTGATACAATAACTAAATTAACTGCCAGATGTGAATTATGTGGCAAACGGGCCCATTTCACCTTCAGGAAGACTAACGAGACAGAAACCGAACTTATAGGTGGGGCGGATATGTATATGCCTGTTTGTCGTCTGCATTATGTTAACGGCGGGCATATGGTGAAGAAAACCATTGCTTAA 675 40.89 MFHHTPLPQIQKMALTPTVHHGDQDQIAKLVRPSGEIHVIVGPMFAGKTTALLRRIKSENTNGRNIAMIKSNKDTRYAIDSVVTHDGTKYPCWALPDLLSFKQKLGEEAYDKLDVIGIDEAQFFDDLYDFCCKAADHDGKTVIVAGLDGDYLRRNFGPVLDIVPLADTITKLTARCELCGKRAHFTFRKTNETETELIGGADMYMPVCRLHYVNGGHMVKKTIA 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00158 224 FunFam Thymidine kinase 173 215 - -
Smso29g00158 224 Pfam Thymidine kinase 35 212 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Smso29g00158 224 PANTHER THYMIDINE KINASE 32 220 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Smso29g00158 224 FunFam Thymidine kinase 31 172 - -
Smso29g00158 224 Gene3D - 29 172 IPR027417 -
Smso29g00158 224 ProSitePatterns Thymidine kinase cellular-type signature. 199 212 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Smso29g00158 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 173 IPR027417 -
Smso29g00158 224 Gene3D - 173 214 - -
Smso29g00158 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 215 - -
Smso29g00158 224 PIRSF Tdk 32 222 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00158 K00857 thymidine kinase [EC:2.7.1.21]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:2470314 Smso7g00128 Smso-Chr7:2140608 wgd