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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00162 ATGGCAATAACTATAAGCTACACGCTTGTTCTAATTTTTTATTTTCTTCCATCTCATTTTGATATATCATATGCTCTCACATGCACAGATCACAGATCCACATCAAGAAGTCTCTACACTTCTTGTAAAGATCTTCCCCATTTATCATCTCAGCTTCATTGGACCTACAACTCAACCATGGGTGTAGCCAAGATTGCGTATCGGGCCAGACAAGGTGCAGGCGGTTGGGTTGCATGGGCCATCAACCCGAACCAAATAGGTATGGTTGGGTCAGAAGCATTGGTGGCTTTTGTCAACAGTAATGGAAGTGTGACAGTATATCCGACAATGATCACTAGTTACAGCCCGTCGATGCTTCCTGCAGATCTTAGCTTTCGGGTTACAGACCTTTCGGCCGAGTTTTTGAGTAACCAGATTACCATTTATGCTACTGTGGGCCCGTTTGCGGGCGGGTCAGTTGTTAATCAAGTGTGGCAAGCTGGGAACTTGGTTTTAGATGGTGTCCCTCAAATGCATGCAGTTTCTCAACAAAATCTTCAATCAACAGGAGAGCTAGATTTCTTGTCTGGTTAG 573 44.15 MAITISYTLVLIFYFLPSHFDISYALTCTDHRSTSRSLYTSCKDLPHLSSQLHWTYNSTMGVAKIAYRARQGAGGWVAWAINPNQIGMVGSEALVAFVNSNGSVTVYPTMITSYSPSMLPADLSFRVTDLSAEFLSNQITIYATVGPFAGGSVVNQVWQAGNLVLDGVPQMHAVSQQNLQSTGELDFLSG 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00162 190 ProSiteProfiles DOMON domain profile. 48 161 IPR005018 -
Smso29g00162 190 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 7 189 - -
Smso29g00162 190 CDD DOMON-CIL1-like 39 189 IPR045265 -
Smso29g00162 190 Pfam Protein of unknown function (DUF568) 88 187 IPR045265 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00162 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:2481648 Smso29g00166 Smso-Chr29:2549495 dispersed
Smso Smso-Chr29:2481648 Smso29g00165 Smso-Chr29:2545530 proximal
Smso Smso-Chr16:78136059 Smso29g00162 Smso-Chr29:2481648 wgd
Smso Smso-Chr18:73149025 Smso29g00162 Smso-Chr29:2481648 wgd
Smso Smso-Chr29:2481648 Smso7g00129 Smso-Chr7:2146320 wgd