AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00172 ATGTCGTTAGCCGTCGAACCTGTTCCCAGTCAAGAAACCAAGAACGGATTCGAAGAAAATGCGGAAGAAAATCAGAGTATGAAGAGAGTCGGGAGCGAATCGTCGGTTTACGAAACCGAAGATGAAGGTGATGATGCAGACGATAATAAAATCGAATTGGGTCCTCAGTGCACCCTCAAAGAACAACTTGAGAAAGACAAGGATGATGAGAGCCTCAGAAAATGGAAAGAACAGCTACTTGGAAACGTTGACATTAATGATGTCGGAGAATCACTGGAACCGGAAGTGAAGATTATCAGCCTCTCGATCGTGTCTCCGGGGAGATCTGATATTGTTCTTAAAGTACCCGAAGATGGAAAACCTAAAGGATTATGGTTTACACTGAAAGAAGGTTGTGGTTACAGGCTGAGGTTCGAGTTTCATGTCAGCCGCAACATTGTTGCAGGTTTAAAGTACACCAACAACGTTTGGAGAACTGGTTTCAAAGTGGATGGAGTGAAACAAATGCTTGGAACTTTTAGCCCCCAACAAGAAGCATACACTTATGAAATGCCTGAAGAGACTACCCCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAATGCTACCTGGAGATCAACTATACATTTGATATCCGGAAAGATTGGGCCAACACTAAATAA 693 42.42 MSLAVEPVPSQETKNGFEENAEENQSMKRVGSESSVYETEDEGDDADDNKIELGPQCTLKEQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKIISLSIVSPGRSDIVLKVPEDGKPKGLWFTLKEGCGYRLRFEFHVSRNIVAGLKYTNNVWRTGFKVDGVKQMLGTFSPQQEAYTYEMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYTFDIRKDWANTK 230
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00172 230 Pfam RHO protein GDP dissociation inhibitor 39 225 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Smso29g00172 230 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 226 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Smso29g00172 230 MobiDBLite consensus disorder prediction 1 15 - -
Smso29g00172 230 PRINTS RHO protein GDP dissociation inhibitor signature 179 191 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Smso29g00172 230 PRINTS RHO protein GDP dissociation inhibitor signature 205 222 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Smso29g00172 230 PRINTS RHO protein GDP dissociation inhibitor signature 146 162 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Smso29g00172 230 PRINTS RHO protein GDP dissociation inhibitor signature 163 178 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Smso29g00172 230 FunFam Rho GDP-dissociation inhibitor 1 49 228 - -
Smso29g00172 230 SUPERFAMILY E set domains 34 227 IPR014756 -
Smso29g00172 230 Gene3D Coagulation Factor XIII, subunit A, domain 1 48 228 IPR024792 -
Smso29g00172 230 MobiDBLite consensus disorder prediction 1 56 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00172 K12462 Rho GDP-dissociation inhibitor
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
148143 Smso18g01520 Smso29g00172
153427 Smso29g00172 Smso9g00720
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr20:17034490 Smso29g00172 Smso-Chr29:2631221 dispersed
Smso Smso-Chr29:2631221 Smso4g02042 Smso-Chr4:31080325 dispersed
Smso Smso-Chr18:73066910 Smso29g00172 Smso-Chr29:2631221 wgd
Smso Smso-Chr18:75982237 Smso29g00172 Smso-Chr29:2631221 wgd
Smso Smso-Chr29:2631221 Smso7g00133 Smso-Chr7:2297720 wgd
Smso Smso-Chr29:2631221 Smso9g00720 Smso-Chr9:16738958 wgd