AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00188 ATGATCGATCTGTTTGTTATGAAGTTCGGCAGCAGTTCGTTGCAATTGTATCAAGTATCTTCAGGTTTGAATTCATTTGATTTCTCATTTTTTCATGCGGGTTACAGTGTGGTTTACATGAGGAGATGCGACAGTACTAGACACTTTTATGCTTTAACCAGTGTTCAGATAGGGGATTTGCAGTCTTATCTTTCAGATCTTAGCCTTTTCCTGGCCCCTGATAGCAAGGCATTCTATGTATTGGTGGATAATAGGCCATGGTTGGAAGATCTGCCCTCACGGCCTGCACACCTATGGCAGTTAATGGTTACCAAGTCAAGGATGTCCCCTTTTGCGAACACAAGAGGGCGAAAGGGGAAGAAAGATACCGCAGAGTTTGTTGAGCAGAAAGTAAGATCTAAATCTTCAAATCACTCCCAAAACCTGAAAAAATGGTTCTCAGTGGTTAATGCTGCAACACTATCAAGAAAGAGGGCTTTGTTACCTGTTAAGAAACTCAGGAGTTCCTTGCTTGCGAATAGCAAATTGCATAGAACTTTGTTTGGGTTTATTGTGTTTCAAGTGGCGTGGGAAGATGTTCGTGGTATCAATTACTTGAATGAGCTTCAGACTGATACATCTCTAGCTATAGAGTCTAAATACATGAAAAGATGGGAATTTGATAGCATAAATCAAGCAGCCAAATGCATAAATAAATGGTTTCCGGGGACACCACGTGAACGGTATCTATTGGAAGAGCATCTTGACTCCATGCTAGGAGATGAATTCCATGATGCTTCCAGTGAATTTCCAGACAGCCCCAGTACAAATAATGATGAAAAAATCTTGAATGTTGGTGCAAGCGGGCCTGATGGATCTCCCTGCACTCCTCGTTGCAATCTTCGTGAAAAAATCGAAACTTCACCAAATCAAACGAGTATACTACATACGCCCCCTCCCAATGGACCCTATAAAAGAAGGAAAGTAATGTCTCCTACAGGAATTAATATTAATTCCAGTTTTTATGCCGAAATAACTCATGGTGAAACCGCTTGCACACCAATGGCTTCATCATATCCAAATGATTTTGAAGAAACAATTGAACCTATGGAGTACAAGGATGTTTTGCTTTTGTTTCGGTTCAATGATCATGACCTCCCATTTGAATTACAAAAGATAATATTATCCAATTCACGATTACTGAGACTATTAGAAGCTGGACTTCCATCCTGGGTAATTTTCTGCCAATCTTATCCTGTTTTTTGTCATATTTACCGCCCATGGATGTGCCCTCTAGCTCGGGCCTTGTACGTAGTAATTTCCATTGTTACGGTTGTTATCGGTTTCTATGATTTGTACAAAAACGTCCCGGTGCTTAAAGCAACCGCCTCCCGTTTATGTGGGCCCCTTTTTGATTGGATAGAAACATGGGAGATGGTCTCGAGAATCAAGTACTTGGGTACCATGTTGTTTTTGCATAATTCTGAGAAGGCGGTTATGTGGTTCTTGATGATGACACGTACCATTCGGTCGTTTGTTTCAGTTATCACACAACCATTAGAGGGGCCGTTCTCTGATTTTATCGAGGTTGTTCTTCCCGTTTGGAATTTGTTGATCGAAACAGGCCAATATTTATGCTCCTTTGTTTGGGTTCTGATGGAAAGTTCTTGGGACGTATTGGAGAATCTAACTGGAGTCATACTGATTCCTGTGTGGTTCATCTCTTCAGTTATTTGGACTATTGCAACAACTGTTATGTACCCAATATTTTGGTGCCTTTGGGGAATACTCTATGCTCCAGTCAGTCTCATTCTCGGTCTATCCAATTTTGTGGGATTTGTTTATAACCAAATATACGATTTAGCTCGAGACATATGGCTGTTTGCAAGTGGAATTTTCAGGTTAGCTTCAAATGCCGAGTCAGCAGTCAACACGTATGAGGTTTCTATTTGGCGCTCTCTCTGGAACGATCTCTTTTCCCAGGTTTTTCATGCTGTTCGGGGTATTTTGAACGGATTTGTTGCATTTTTTATAGCTTGCAATAGACATCGATTAAGCATATATAATCATATACAGGAGTTCATCAGAACACTTAATCAACCAGCCCAGAGGCCAATGCCCTTGGATTCTAGCTATAGTTCACAGAGATCTAGAAATCAAATGCAGGGAGAGGCTGGGGAAAGAAAGGTGCCACCTAGGAGAAACTTAAAACAGAGTTGA 2199 40.97 MIDLFVMKFGSSSLQLYQVSSGLNSFDFSFFHAGYSVVYMRRCDSTRHFYALTSVQIGDLQSYLSDLSLFLAPDSKAFYVLVDNRPWLEDLPSRPAHLWQLMVTKSRMSPFANTRGRKGKKDTAEFVEQKVRSKSSNHSQNLKKWFSVVNAATLSRKRALLPVKKLRSSLLANSKLHRTLFGFIVFQVAWEDVRGINYLNELQTDTSLAIESKYMKRWEFDSINQAAKCINKWFPGTPRERYLLEEHLDSMLGDEFHDASSEFPDSPSTNNDEKILNVGASGPDGSPCTPRCNLREKIETSPNQTSILHTPPPNGPYKRRKVMSPTGININSSFYAEITHGETACTPMASSYPNDFEETIEPMEYKDVLLLFRFNDHDLPFELQKIILSNSRLLRLLEAGLPSWVIFCQSYPVFCHIYRPWMCPLARALYVVISIVTVVIGFYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNSEKAVMWFLMMTRTIRSFVSVITQPLEGPFSDFIEVVLPVWNLLIETGQYLCSFVWVLMESSWDVLENLTGVILIPVWFISSVIWTIATTVMYPIFWCLWGILYAPVSLILGLSNFVGFVYNQIYDLARDIWLFASGIFRLASNAESAVNTYEVSIWRSLWNDLFSQVFHAVRGILNGFVAFFIACNRHRLSIYNHIQEFIRTLNQPAQRPMPLDSSYSSQRSRNQMQGEAGERKVPPRRNLKQS 732
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00188 732 MobiDBLite consensus disorder prediction 259 288 - -
Smso29g00188 732 MobiDBLite consensus disorder prediction 696 732 - -
Smso29g00188 732 MobiDBLite consensus disorder prediction 696 714 - -
Smso29g00188 732 PANTHER OS05G0597400 PROTEIN 40 723 - -
Smso29g00188 732 MobiDBLite consensus disorder prediction 262 276 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00188 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
142994 Smso10g03325 Smso29g00188
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr29:3006829 Smso10g03282 Smso-Chr10:87968578 dispersed
Smso Smso-Chr29:3006829 Smso7g00149 Smso-Chr7:2615502 wgd