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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso29g00190 ATGAAAATAGACCAAGACCTCAACCAACAGGAACGTGACATCTGTCGTACAATCGAAGTTGTTCGATCCGCCGTAACCAAGCAATCATCCATGGCGGCCGATAACTTCGATTCCAACGGCGAGGAGCTCTACACGCCTCCGCTCAATTTCTCCATGGTCGATAATGGCATATTCCGTTCCGGCTTCCCGGACACCGCCAATTTCTCCTTTCTCAAAACCCTAGGCCTGCGTTCTATTGTATATTTGTGCCCTGAACCATATCCGGAGCATAATATGGAGTTTTTGAAGGATAATCGAATTCATTTGTTTCAATTTGGAATTGAAGGAACTAAGGAACCTTTTGTGAATATACCCGAAGACACAATTCGTGAAGCGTTGAAAGTTGTCATTGATGTAAGAAATCATCCATTGTTGATTCATTGCAAAAGAGGCAAGCACCGAACGGGTTGTCTTGTGGGATGTTTGAGAAAGATACAAAGATGGTGTTTAACATCAATCTTTGATGAATACCAAAGATTTGCTGCTGCAAAAGCTAGACTTTCAGATCAAAGGTTTATGGAGCTTTTTGATGCATCTGGATTCAAAGATATACCGCCGTCTCCATGTTCTTGTTCGAGGAGGTAA 624 42.63 MKIDQDLNQQERDICRTIEVVRSAVTKQSSMAADNFDSNGEELYTPPLNFSMVDNGIFRSGFPDTANFSFLKTLGLRSIVYLCPEPYPEHNMEFLKDNRIHLFQFGIEGTKEPFVNIPEDTIREALKVVIDVRNHPLLIHCKRGKHRTGCLVGCLRKIQRWCLTSIFDEYQRFAAAKARLSDQRFMELFDASGFKDIPPSPCSCSRR 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso29g00190 207 FunFam probable tyrosine-protein phosphatase At1g05000 43 193 - -
Smso29g00190 207 Pfam Tyrosine phosphatase family 46 196 IPR004861 -
Smso29g00190 207 Gene3D Protein tyrosine phosphatase superfamily 44 193 IPR029021 -
Smso29g00190 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 139 149 IPR016130 GO:0016311(InterPro)
Smso29g00190 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 49 200 IPR020422 GO:0006470(InterPro)
Smso29g00190 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 35 199 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Smso29g00190 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 190 IPR029021 -
Smso29g00190 207 CDD PFA-DSP-Siw14 43 190 - -
Smso29g00190 207 PRINTS Plant and fungal dual specificity phosphatase signature 44 61 IPR020428 GO:0016791(InterPro)
Smso29g00190 207 PRINTS Plant and fungal dual specificity phosphatase signature 81 94 IPR020428 GO:0016791(InterPro)
Smso29g00190 207 PRINTS Plant and fungal dual specificity phosphatase signature 100 114 IPR020428 GO:0016791(InterPro)
Smso29g00190 207 PRINTS Plant and fungal dual specificity phosphatase signature 117 131 IPR020428 GO:0016791(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso29g00190 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Event-related genes

Select Gene_1 Gene_2 Event_name
153428 Smso29g00190 Smso9g00726
431869 Smso26g01955 Smso29g00190
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Smso Smso-Chr14:18808999 Smso29g00190 Smso-Chr29:3026788 dispersed
Smso Smso-Chr25:65205279 Smso29g00190 Smso-Chr29:3026788 dispersed
Smso Smso-Chr18:72743132 Smso29g00190 Smso-Chr29:3026788 wgd
Smso Smso-Chr26:42290107 Smso29g00190 Smso-Chr29:3026788 wgd
Smso Smso-Chr29:3026788 Smso7g00151 Smso-Chr7:2649632 wgd
Smso Smso-Chr29:3026788 Smso9g00726 Smso-Chr9:16918531 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
SmsoJAKNSE010000037g00221 . 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 71.134 3.71e-101 293.0
SmsoJAKNSE010000034g00044 . 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.486 0.0 1112.0
Smso29g00190 ACH,WGDA 17 215 Protein tyrosine phosphatase (PTP) family AT1G05000 73.5 1.99e-100 288.0
Smso29g01314 SST,WGDA 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 63.504 0.0 848.0
Smso28g01317 . 9 235 Protein tyrosine phosphatase (PTP) family AT3G44620 64.783 4.38e-99 287.0
Smso26g00056 SST,WGDA 1 310 Protein tyrosine phosphatase (PTP) family AT2G35680 52.83 1.92e-110 322.0
Smso26g00692 SST,WGDA 398 462 Protein tyrosine phosphatase (PTP) family AT3G55270 44.615 2.26e-10 59.7
Smso26g01361 SST 1 407 Protein tyrosine phosphatase (PTP) family AT5G58160 55.501 8.45e-164 504.0
Smso26g01382 SST,WGDA 45 653 Protein tyrosine phosphatase (PTP) family AT5G01290 66.397 0.0 826.0
Smso26g01955 ACH,WGDA 1 215 Protein tyrosine phosphatase (PTP) family AT1G05000 62.037 6.89e-92 266.0
Smso26g02103 . 11 611 Protein tyrosine phosphatase (PTP) family AT3G19420 64.521 0.0 792.0
Smso26g02458 ACH,SST,WGDA 10 840 Protein tyrosine phosphatase (PTP) family AT3G10550 65.135 0.0 1105.0
Smso25g00492 SST,WGDA 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 40.625 1.36e-07 51.6
Smso25g01991 ACH,SST 330 473 Protein tyrosine phosphatase (PTP) family AT3G55270 61.379 9.72e-54 191.0
Smso25g02342 WGDA 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 58.854 1.78e-153 436.0
Smso25g02470 . 335 462 Protein tyrosine phosphatase (PTP) family AT3G55270 40.625 5.46e-28 109.0
Smso25g02809 . 4 185 Protein tyrosine phosphatase (PTP) family AT3G02800 58.031 3.34e-83 244.0
Smso24g00383 SST 20 196 Protein tyrosine phosphatase (PTP) family AT3G23610 58.192 1.40e-69 213.0
Smso24g00680 SST 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 58.719 1.63e-105 305.0
Smso24g01535 SST 59 611 Protein tyrosine phosphatase (PTP) family AT3G19420 60.676 0.0 705.0
Smso24g01793 ACH,SST,WGDA 32 337 Protein tyrosine phosphatase (PTP) family AT2G35680 51.097 8.16e-104 305.0
Smso24g02371 SST,WGDA 369 462 Protein tyrosine phosphatase (PTP) family AT3G55270 41.489 1.09e-17 80.9
Smso22g00078 SST 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 70.619 3.56e-100 291.0
Smso22g00134 . 506 543 Protein tyrosine phosphatase (PTP) family AT3G01510 65.789 1.01e-13 62.0
Smso22g02344 . 35 190 Protein tyrosine phosphatase (PTP) family AT3G23610 62.179 9.44e-64 195.0
Smso22g02345 ACH,SST,WGDA 14 912 Protein tyrosine phosphatase (PTP) family AT5G23720 63.496 0.0 1134.0
Smso21g00008 WGDA 717 832 Protein tyrosine phosphatase (PTP) family AT3G10550 42.636 2.06e-25 100.0
Smso21g00009 ACH,SST,WGDA 295 684 Protein tyrosine phosphatase (PTP) family AT3G10550 73.724 0.0 583.0
Smso21g00751 ACH,SST 457 540 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 1.29e-06 48.9
Smso21g00862 ACH,SST 1 784 Protein tyrosine phosphatase (PTP) family AT3G55270 50.714 0.0 753.0
Smso21g01970 ACH,SST 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 6.95e-07 48.5
Smso20g01097 ACH,SST 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 71.649 1.52e-101 294.0
Smso20g01570 . 152 256 Protein tyrosine phosphatase (PTP) family AT2G35680 43.75 3.87e-20 82.4
Smso20g02526 . 416 462 Protein tyrosine phosphatase (PTP) family AT3G55270 46.809 1.62e-09 52.0
Smso19g01677 SST 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 3.95e-06 46.2
Smso18g00098 ACH,SST,WGDA 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 70.619 5.05e-100 290.0
Smso18g01288 SST,WGDA 66 611 Protein tyrosine phosphatase (PTP) family AT3G19420 68.897 0.0 771.0
Smso18g01497 ACH,SST,WGDA 10 203 Protein tyrosine phosphatase (PTP) family AT1G05000 65.464 8.37e-88 255.0
Smso18g01984 WGDA 444 550 Protein tyrosine phosphatase (PTP) family AT3G01510 29.464 1.40e-07 52.0
Smso18g01986 WGDA 444 550 Protein tyrosine phosphatase (PTP) family AT3G01510 29.464 1.40e-07 52.0
Smso18g02683 SST 1 327 Protein tyrosine phosphatase (PTP) family AT2G35680 53.799 1.08e-116 338.0
Smso17g00241 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 53.55 0.0 693.0
Smso17g01610 ACH 8 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.664 0.0 1113.0
Smso16g01640 SST 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 58.065 2.17e-105 305.0
Smso15g02057 ACH,WGDA 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 59.416 0.0 1031.0
Smso14g00227 . 146 216 Protein tyrosine phosphatase (PTP) family AT3G55270 61.972 2.71e-29 114.0
Smso14g00524 . 5 185 Protein tyrosine phosphatase (PTP) family AT3G02800 60.221 3.29e-82 241.0
Smso14g02698 ACH,SST,WGDA 14 906 Protein tyrosine phosphatase (PTP) family AT5G23720 63.363 0.0 1120.0
Smso13g00031 ACH 28 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.588 0.0 796.0
Smso13g00582 SST,WGDA 45 653 Protein tyrosine phosphatase (PTP) family AT5G01290 66.774 0.0 827.0
Smso13g01004 SST,WGDA 388 462 Protein tyrosine phosphatase (PTP) family AT3G55270 37.333 5.01e-09 55.5
Smso13g01390 SST,WGDA 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 48.876 3.94e-110 322.0
Smso12g00217 SST 11 282 Protein tyrosine phosphatase (PTP) family AT3G10940 73.529 3.81e-150 419.0
Smso12g00551 . 1 372 Protein tyrosine phosphatase (PTP) family AT3G52180 60.16 4.20e-156 442.0
Smso12g00559 ACH,SST 18 840 Protein tyrosine phosphatase (PTP) family AT3G10550 62.905 0.0 1068.0
Smso12g00998 SST 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 73.446 0.0 811.0
Smso12g02732 SST 427 534 Protein tyrosine phosphatase (PTP) family AT3G01510 30.909 4.07e-06 45.8
Smso12g03910 . 6 196 Protein tyrosine phosphatase (PTP) family AT3G02800 62.694 4.68e-85 249.0
Smso11g00618 . 6 196 Protein tyrosine phosphatase (PTP) family AT3G02800 62.176 2.44e-84 247.0
Smso11g02074 SST 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.881 0.0 803.0
Smso11g02527 ACH,SST 321 840 Protein tyrosine phosphatase (PTP) family AT3G10550 47.5 6.46e-148 446.0
Smso11g02535 ACH,SST 1 372 Protein tyrosine phosphatase (PTP) family AT3G52180 59.893 7.29e-151 447.0
Smso11g02898 SST 11 282 Protein tyrosine phosphatase (PTP) family AT3G10940 73.162 4.49e-150 419.0
Smso10g00939 ACH,SST 1 315 Protein tyrosine phosphatase (PTP) family AT2G35680 50.633 1.26e-101 298.0
Smso10g03343 SST 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 58.974 7.49e-105 303.0
Smso10g03885 . 173 313 Protein tyrosine phosphatase (PTP) family AT1G71860 64.539 3.35e-63 199.0
Smso9g00048 ACH,SST 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.779 5.15e-119 343.0
Smso9g00726 ACH,SST,WGDA 72 180 Protein tyrosine phosphatase (PTP) family AT4G03960 61.468 2.32e-44 142.0
Smso9g00849 SST,WGDA 63 611 Protein tyrosine phosphatase (PTP) family AT3G19420 69.203 0.0 781.0
Smso9g01471 SST,WGDA 36 327 Protein tyrosine phosphatase (PTP) family AT2G35680 52.397 3.40e-99 293.0
Smso8g03310 ACH,SST 330 473 Protein tyrosine phosphatase (PTP) family AT3G55270 62.759 2.40e-56 197.0
Smso7g00151 ACH 17 215 Protein tyrosine phosphatase (PTP) family AT1G05000 73.632 1.84e-100 288.0
Smso7g01349 SST,WGDA 45 653 Protein tyrosine phosphatase (PTP) family AT5G01290 66.343 0.0 835.0
Smso7g01738 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.224 2.32e-154 489.0
Smso6g00582 SST,WGDA 72 781 Protein tyrosine phosphatase (PTP) family AT3G55270 42.135 1.28e-168 501.0
Smso6g01215 SST,WGDA 32 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.659 8.28e-117 339.0
Smso6g01370 WGDA 70 334 Protein tyrosine phosphatase (PTP) family AT5G39400 53.585 2.78e-93 278.0
Smso6g01510 SST 59 311 Protein tyrosine phosphatase (PTP) family AT3G19420 65.613 6.42e-115 346.0
Smso6g01511 SST 59 311 Protein tyrosine phosphatase (PTP) family AT3G19420 65.613 6.42e-115 346.0
Smso6g01512 SST 373 611 Protein tyrosine phosphatase (PTP) family AT3G19420 43.373 5.26e-57 189.0
Smso5g00410 SST 21 189 Protein tyrosine phosphatase (PTP) family AT3G23610 60.947 5.92e-73 216.0
Smso5g00699 . 1 87 Protein tyrosine phosphatase (PTP) family AT2G04550 78.161 1.29e-43 139.0
Smso5g00702 SST 80 257 Protein tyrosine phosphatase (PTP) family AT2G04550 49.254 7.52e-53 169.0
Smso5g01764 ACH,WGDA 556 840 Protein tyrosine phosphatase (PTP) family AT3G10550 53.535 3.73e-110 336.0
Smso5g01765 ACH,SST,WGDA 10 506 Protein tyrosine phosphatase (PTP) family AT3G10550 72.056 0.0 742.0
Smso4g00009 ACH,SST,WGDA 7 840 Protein tyrosine phosphatase (PTP) family AT3G10550 65.493 0.0 1122.0
Smso4g00742 ACH,SST 458 540 Protein tyrosine phosphatase (PTP) family AT3G01510 33.735 4.43e-06 47.4
Smso4g00871 ACH,SST 1 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.765 0.0 750.0
Smso4g02056 ACH,SST 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 2.11e-06 47.0
Smso3g01268 . 16 301 Protein tyrosine phosphatase (PTP) family AT2G35320 56.747 1.64e-122 350.0
Smso3g02748 SST,WGDA 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 27.381 3.34e-06 46.6
Smso2g00127 SST,WGDA 65 159 Protein tyrosine phosphatase (PTP) family AT3G01510 23.158 8.82e-06 45.4
Smso2g01047 WGDA 19 405 Protein tyrosine phosphatase (PTP) family AT5G39400 56.701 2.01e-160 456.0
Smso1g01231 SST,WGDA 34 227 Protein tyrosine phosphatase (PTP) family AT5G56610 71.134 6.54e-100 290.0
Smso1g02536 SST,WGDA 265 326 Protein tyrosine phosphatase (PTP) family AT3G52180 40.625 1.40e-07 51.6
Smso1g04295 . 62 186 Protein tyrosine phosphatase (PTP) family AT3G23610 38.4 2.16e-18 80.9